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pop.ui
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pop.ui
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<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
<class>MainWindow</class>
<widget class="QMainWindow" name="MainWindow">
<property name="geometry">
<rect>
<x>0</x>
<y>0</y>
<width>973</width>
<height>829</height>
</rect>
</property>
<property name="font">
<font>
<pointsize>12</pointsize>
</font>
</property>
<property name="windowTitle">
<string>MainWindow</string>
</property>
<widget class="QWidget" name="centralwidget">
<layout class="QGridLayout" name="gridLayout_2">
<item row="0" column="1">
<spacer name="verticalSpacer">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeType">
<enum>QSizePolicy::Fixed</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>20</width>
<height>20</height>
</size>
</property>
</spacer>
</item>
<item row="1" column="1">
<layout class="QGridLayout" name="gridLayout">
<item row="2" column="0" rowspan="2">
<widget class="QGroupBox" name="groupBox">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Preferred">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="maximumSize">
<size>
<width>600</width>
<height>16777215</height>
</size>
</property>
<property name="toolTip">
<string>Please select organism(s) and an endonuclease, and click "Analyze Organism(s)" to populate the population analysis window.</string>
</property>
<property name="title">
<string>Select Organism(s) and Endonuclease:</string>
</property>
<layout class="QGridLayout" name="gridLayout_6">
<item row="3" column="0" colspan="2">
<widget class="QPushButton" name="analyze_button">
<property name="font">
<font>
<weight>75</weight>
<bold>true</bold>
</font>
</property>
<property name="text">
<string>Analyze Organism(s)</string>
</property>
</widget>
</item>
<item row="0" column="0" colspan="2">
<spacer name="verticalSpacer_3">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeType">
<enum>QSizePolicy::Fixed</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>10</width>
<height>10</height>
</size>
</property>
</spacer>
</item>
<item row="1" column="1">
<widget class="QComboBox" name="endoBox">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Fixed">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
</widget>
</item>
<item row="2" column="0" colspan="2">
<widget class="QTableWidget" name="org_Table">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Expanding">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="minimumSize">
<size>
<width>0</width>
<height>225</height>
</size>
</property>
</widget>
</item>
<item row="1" column="0">
<widget class="QLabel" name="label">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Fixed">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="text">
<string>Endonuclease:</string>
</property>
</widget>
</item>
<item row="4" column="0" colspan="2">
<widget class="QTabWidget" name="tabWidget">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Expanding">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="minimumSize">
<size>
<width>0</width>
<height>225</height>
</size>
</property>
<property name="toolTip">
<string><html><head/><body><p>Heatmap of shared repeats between all selected organisms. Diagonals show number of self-contained repeats. Axis labels correspond to the rows of the organism selection table.</p></body></html></string>
</property>
<property name="currentIndex">
<number>0</number>
</property>
<widget class="QWidget" name="tab">
<attribute name="title">
<string>Shared Seed Heatmap</string>
</attribute>
<layout class="QGridLayout" name="gridLayout_3">
<item row="0" column="0">
<widget class="QWidget" name="colormap_figure" native="true"/>
</item>
</layout>
</widget>
</widget>
</item>
<item row="5" column="0" colspan="2">
<spacer name="verticalSpacer_4">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeType">
<enum>QSizePolicy::Fixed</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>10</width>
<height>10</height>
</size>
</property>
</spacer>
</item>
</layout>
</widget>
</item>
<item row="4" column="0" alignment="Qt::AlignLeft">
<widget class="QPushButton" name="goBackButton">
<property name="minimumSize">
<size>
<width>125</width>
<height>0</height>
</size>
</property>
<property name="text">
<string>Back</string>
</property>
</widget>
</item>
<item row="2" column="1" rowspan="2">
<widget class="QGroupBox" name="groupBox_2">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="toolTip">
<string><html><head/><body><p>These tables show the seeds that are conserved among <span style=" font-weight:600;">all </span>selected organisms.</p></body></html></string>
</property>
<property name="title">
<string>Seed Analysis:</string>
</property>
<layout class="QGridLayout" name="gridLayout_5">
<item row="4" column="1">
<widget class="QPushButton" name="find_locs_button">
<property name="text">
<string>Find Locations</string>
</property>
</widget>
</item>
<item row="2" column="0">
<widget class="QPushButton" name="query_seed_button">
<property name="text">
<string>Query Seed</string>
</property>
</widget>
</item>
<item row="3" column="0" colspan="3">
<widget class="QTableWidget" name="table2">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="minimumSize">
<size>
<width>0</width>
<height>225</height>
</size>
</property>
<property name="toolTip">
<string><html><head/><body><p><span style=" font-weight:600;">% Coverage</span>: percentage of analyzed organisms covered by the given seed sequence. (Ex. a coverage of 75% for an analysis of 4 organisms means that the seed appears in 3/4 of the organisms) </p><p><span style=" font-weight:600;">Total Repeats</span>: the total number of times the seed sequence is repeated across all organisms analyzed </p><p><span style=" font-weight:600;">Avg. Repeats/Scaffold</span>: the average number of times the seed sequence is repeated per scaffold/chromosome/contig (varies depending on how the organism’s FASTA file is arranged) </p><p><span style=" font-weight:600;">Consensus Sequence</span>: the full length guide RNA sequence that appears most commonly amongst all occurrences of the given seed. </p><p><span style=" font-weight:600;">% Consensus</span>: the percentage of all seed repeats that have the tail of the consensus sequence. </p><p><span style=" font-weight:600;">Score</span>: on-target score for the consensus sequence.</p><p><span style=" font-weight:600;">PAM</span>: the protospacer adjacent motif of the consensus sequence.</p><p><span style=" font-weight:600;">Strand</span>: the strand directionality (+ or -) of the consensus sequence.</p></body></html></string>
</property>
</widget>
</item>
<item row="2" column="2">
<widget class="QPushButton" name="clear_Button">
<property name="text">
<string>Clear Seeds</string>
</property>
</widget>
</item>
<item row="1" column="1" colspan="2">
<widget class="QLineEdit" name="seed_input"/>
</item>
<item row="0" column="0" colspan="3">
<spacer name="verticalSpacer_5">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeType">
<enum>QSizePolicy::Fixed</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>10</width>
<height>10</height>
</size>
</property>
</spacer>
</item>
<item row="4" column="2">
<widget class="QPushButton" name="clear_loc_button">
<property name="text">
<string>Clear Locations</string>
</property>
</widget>
</item>
<item row="4" column="0">
<widget class="QLabel" name="label_3">
<property name="toolTip">
<string><html><head/><body><p>Highlight a seed and click &quot;Find Locations&quot; to view the exact location and organism of every repeat belonging to that seed.</p></body></html></string>
</property>
<property name="text">
<string><html><head/><body><p><span style=" font-weight:600;">Location Finder:</span></p></body></html></string>
</property>
</widget>
</item>
<item row="5" column="0" colspan="3">
<widget class="QTableWidget" name="loc_finder_table">
<property name="sizePolicy">
<sizepolicy hsizetype="Expanding" vsizetype="Preferred">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="minimumSize">
<size>
<width>0</width>
<height>225</height>
</size>
</property>
</widget>
</item>
<item row="1" column="0">
<widget class="QLabel" name="label_2">
<property name="sizePolicy">
<sizepolicy hsizetype="Fixed" vsizetype="Fixed">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="text">
<string>Seed Search:</string>
</property>
</widget>
</item>
<item row="6" column="0" colspan="3">
<spacer name="verticalSpacer_6">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeType">
<enum>QSizePolicy::Fixed</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>10</width>
<height>10</height>
</size>
</property>
</spacer>
</item>
</layout>
</widget>
</item>
<item row="4" column="1" alignment="Qt::AlignRight">
<widget class="QPushButton" name="export_button">
<property name="minimumSize">
<size>
<width>175</width>
<height>0</height>
</size>
</property>
<property name="toolTip">
<string><html><head/><body><p>Click to export selected gRNAs. <span style=" font-weight:600;">Note: </span>only rows from the first (top right) table can be selected and exported.</p></body></html></string>
</property>
<property name="text">
<string>Export Selected gRNAs</string>
</property>
</widget>
</item>
<item row="0" column="0" colspan="2">
<widget class="QLabel" name="title">
<property name="sizePolicy">
<sizepolicy hsizetype="Preferred" vsizetype="Fixed">
<horstretch>0</horstretch>
<verstretch>0</verstretch>
</sizepolicy>
</property>
<property name="text">
<string>Population Analysis</string>
</property>
</widget>
</item>
<item row="1" column="0" colspan="2">
<widget class="Line" name="line">
<property name="orientation">
<enum>Qt::Horizontal</enum>
</property>
</widget>
</item>
</layout>
</item>
<item row="2" column="1">
<spacer name="verticalSpacer_2">
<property name="orientation">
<enum>Qt::Vertical</enum>
</property>
<property name="sizeType">
<enum>QSizePolicy::Fixed</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>20</width>
<height>20</height>
</size>
</property>
</spacer>
</item>
<item row="1" column="2">
<spacer name="horizontalSpacer">
<property name="orientation">
<enum>Qt::Horizontal</enum>
</property>
<property name="sizeType">
<enum>QSizePolicy::Fixed</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>20</width>
<height>20</height>
</size>
</property>
</spacer>
</item>
<item row="1" column="0">
<spacer name="horizontalSpacer_2">
<property name="orientation">
<enum>Qt::Horizontal</enum>
</property>
<property name="sizeType">
<enum>QSizePolicy::Fixed</enum>
</property>
<property name="sizeHint" stdset="0">
<size>
<width>20</width>
<height>20</height>
</size>
</property>
</spacer>
</item>
</layout>
</widget>
<widget class="QStatusBar" name="statusbar"/>
</widget>
<resources/>
<connections/>
</ui>