test.yml

name: Testing

on: [push, pull_request]
env:
  EMG_CONFIG: ${{ github.workspace }}/ci/configuration.yaml


jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.4.10, 3.6.13]
    steps:
    - uses: actions/checkout@v2
    - name: 🐍 - Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version:  ${{ matrix.python-version }}
    - name: 💾 Start MongoDB
      uses: supercharge/mongodb-github-action@1.3.0
      with:
        mongodb-version: 4.0.6
    - name: ⚙️ - Checking environment
      run: |
        python -V
        sudo systemctl start mysql
        mysql --version
        mysql -uroot -proot -e 'CREATE DATABASE emg;'
        mysql -uroot -proot -e "SET GLOBAL sql_mode = 'STRICT_TRANS_TABLES'"

    - name: 🔧 - Install Dependencies
      run: |
        pip install -U git+git://github.com/EBI-Metagenomics/emg-backlog-schema.git
        pip install -U git+git://github.com/EBI-Metagenomics/ena-api-handler.git
        pip install -U -r requirements-test.txt
        pip install "flake8==3.4" "pycodestyle==2.3.1" pep8-naming
        pip install "git+git://github.com/EBI-Metagenomics/django-rest-framework-json-api@develop#egg=djangorestframework-jsonapi"
        python setup.py sdist
        pip install -U .
        pip freeze
    - name: 🧪 - Testing
      run: |
        cat $EMG_CONFIG
        python setup.py test
    - name: Flake
      continue-on-error: true
      run: |
        flake8 --version
        flake8 -v .
    - name: 📮 - Slack Notification
      uses: rtCamp/action-slack-notify@v2
      continue-on-error: true
      if: github.ref == 'refs/heads/master' || github.ref == 'refs/heads/develop'
      env:
        SLACK_COLOR: "${{ job.status == 'success' && 'good' || 'danger' }}"
        SLACK_USERNAME: "Github Actions API"
        SLACK_ICON_EMOJI: ":octocat:"
        SLACK_TITLE: "CI API results in GitHub Actions"
        SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }}
        SLACK_CHANNEL: "#metagenomics-notify"
        MSG_MINIMAL: Actions URL