diff --git a/src/main/java/uk/ac/ebi/eva/pipeline/runner/EvaPipelineJobLauncherCommandLineRunner.java b/src/main/java/uk/ac/ebi/eva/pipeline/runner/EvaPipelineJobLauncherCommandLineRunner.java
index fb392cb51..37ab70b47 100644
--- a/src/main/java/uk/ac/ebi/eva/pipeline/runner/EvaPipelineJobLauncherCommandLineRunner.java
+++ b/src/main/java/uk/ac/ebi/eva/pipeline/runner/EvaPipelineJobLauncherCommandLineRunner.java
@@ -208,33 +208,21 @@ private Optional<Properties> getJobParametersFromCommandLine(String[] args)
     }
 
     private void launchJob(JobParameters jobParameters) throws JobExecutionException, UnknownJobException {
-        executeLocalJobs(jobParameters);
-        executeRegisteredJobs(jobParameters);
-    }
-
-    private void executeLocalJobs(JobParameters jobParameters) throws JobExecutionException {
         for (Job job : this.jobs) {
-            if (!PatternMatchUtils.simpleMatch(jobName, job.getName())) {
-                logger.debug("Skipped job: " + job.getName());
-                continue;
+            if (PatternMatchUtils.simpleMatch(jobName, job.getName())) {
+                execute(job, jobParameters);
+                return;
             }
-            execute(job, jobParameters);
-            return;
         }
-    }
 
-    private void executeRegisteredJobs(JobParameters jobParameters) throws JobExecutionException {
         if (this.jobRegistry != null) {
             try {
-                Job job = jobRegistry.getJob(jobName);
-                if (this.jobs.contains(job)) {
-                    return;
-                }
-                execute(job, jobParameters);
-                return;
+                execute(jobRegistry.getJob(jobName), jobParameters);
             } catch (NoSuchJobException ex) {
-                logger.debug("No job found in registry for job name: " + jobName);
+                logger.error("No job found in registry for job name: " + jobName);
             }
+        } else {
+            logger.error("Job not found and no JobRegistry initializated.");
         }
     }