_site.yml

name: EDUCE
output_dir: '_site'
navbar:
  title: EDUCE
  left:
  - text: About
    href: about.html
  - text: educer package
    menu:
    - text: Tutorials
      href: tutorials.html
  - text: Setup instructions
    menu:
    - text: Updating your operating system
      href: os.html
    - text: R and RStudio
      href: r_and_rstudio.html
    - text: educer package
      href: educer.html
    - text: Working on a server
      href: server.html
    - text: bash
      href: bash.html
    - text: Miniconda
      href: conda.html
    - text: QIIME 2
      href: qiime2.html
    - text: VPN
      href: vpn.html
    - text: Courses
      menu:
        - text: MICB 322
          href: MICB322.html
    - text: Workshops
      menu:
      - text: Introduction to R and RStudio
        href: r_and_rstudio_ws_setup.html
      - text: Introduction to the R tidyverse
        href: tidyverse_ws_setup.html
      - text: Reproducible research
        href: reproducibility_ws_setup.html
      - text: Intermediate R programming
        href: intermediate_R_ws_setup.html
      - text: Statistical models in R
        href: stats_ws_setup.html
      - text: Creating web apps in R with Shiny
        href: shiny_ws_setup.html
      - text: Amplicon sequence analysis
        href: qiime_ws_setup.html
  - text: Videos
    menu:
    - text: Installation instructions
      href: setup_video.html
    - text: Introduction to command line
      href: cmd_line_video.html
  - text: Course Compiler
    menu: 
    - text: About
      href: about_compiler.html
    - text: Course outline
      href: course_outline.html
    - text: Example data
      href: about_data.html
    - text: Shiny app
      href: compiler.html
  - text: Data Manipulator
    menu: 
    - text: About
      href: about_manipulator.html
    - text: Normalization methods
      href: about_normalization.html
    - text: Shiny app
      href: manipulator.html
output:
  html_document:
    lib_dir: site_libs
    self_contained: no