index.Rmd

---
title: "MICB 405 Bioinformatics"
subtitle: "2021.22"
author: "Axel Hauduc and Stephan Koenig"
date: "`r format(Sys.time(), '%B %d, %Y')`"
site: bookdown::bookdown_site
documentclass: book
bibliography: biblio/book.bib
csl: biblio/american-society-for-microbiology.csl
link-citations: true
description: >-
  A collection of tutorials and the capstone project information for MICB 405.
params:
  windows_version: 21H1
  windows_version_release_date: "the first half---May---of 2021"
  macos_version: Big Sur
  macos_version_link: https://support.apple.com/en-us/HT201475
  r_legacy_version: 3.3.3
  rstudio_version: 2021.09.0
  rstudio_legacy_version: 1.1.463
  project: deseq
---

```{r setup, include = FALSE}
library(here)
library(tidyverse)
library(broom)
library(DESeq2)
library(pheatmap)
library(RColorBrewer)

# Render all xaringan slides
options(knitr.duplicate.label = "allow")
fs::dir_ls("slides", recurse = 1, type = "file", glob = "*.Rmd") %>% 
  purrr::walk(rmarkdown::render)
```

# About {.unnumbered}

Welcome to the MICB 405 Tutorials website! You will find all tutorials and tutorial worksheets uploaded here each week ahead of the Friday tutorials.

MICB 405 introduces you to the concepts and applications of sequence-based bioinformatics research across several broad topic areas, including Unix/Linux and the command line and massively parallel sequencing and their applications. From a biological perspective, we will discuss the main considerations and applications of the computational tools used in these subject areas. In team projects supplementing lecture materials, you will work within groups to apply those bioinformatics tools to experimental data sets.

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::: {.column width="10%"}
[![](`r here("images", "canvas.svg")`)](https://canvas.ubc.ca/courses/79973)
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[Please visit the Canvas MICB 405 site](https://canvas.ubc.ca/courses/79973) for the syllabus, schedule (via calendar), lectures, module quizzes and team project details.
:::

::::