diff --git a/templates/ERC000011/ERC000011.json b/templates/ERC000011/ERC000011.json index 829c84f3..0a42c4d7 100644 --- a/templates/ERC000011/ERC000011.json +++ b/templates/ERC000011/ERC000011.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000011/README.md b/templates/ERC000011/README.md index 50ea075a..c539c919 100644 --- a/templates/ERC000011/README.md +++ b/templates/ERC000011/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000011/metadata_template_ERC000011.xlsx b/templates/ERC000011/metadata_template_ERC000011.xlsx index dab60b92..511fbe97 100644 Binary files a/templates/ERC000011/metadata_template_ERC000011.xlsx and b/templates/ERC000011/metadata_template_ERC000011.xlsx differ diff --git a/templates/ERC000012/ERC000012.json b/templates/ERC000012/ERC000012.json index c9d3a219..7f50aa58 100644 --- a/templates/ERC000012/ERC000012.json +++ b/templates/ERC000012/ERC000012.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000012/README.md b/templates/ERC000012/README.md index bb968c0a..6be7faa7 100644 --- a/templates/ERC000012/README.md +++ b/templates/ERC000012/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000012/metadata_template_ERC000012.xlsx b/templates/ERC000012/metadata_template_ERC000012.xlsx index b1736046..943a8520 100644 Binary files a/templates/ERC000012/metadata_template_ERC000012.xlsx and b/templates/ERC000012/metadata_template_ERC000012.xlsx differ diff --git a/templates/ERC000013/ERC000013.json b/templates/ERC000013/ERC000013.json index e85b78e0..a6746c04 100644 --- a/templates/ERC000013/ERC000013.json +++ b/templates/ERC000013/ERC000013.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000013/README.md b/templates/ERC000013/README.md index 871a59df..a2dc4f41 100644 --- a/templates/ERC000013/README.md +++ b/templates/ERC000013/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000013/metadata_template_ERC000013.xlsx b/templates/ERC000013/metadata_template_ERC000013.xlsx index cf047bda..73987fdd 100644 Binary files a/templates/ERC000013/metadata_template_ERC000013.xlsx and b/templates/ERC000013/metadata_template_ERC000013.xlsx differ diff --git a/templates/ERC000014/ERC000014.json b/templates/ERC000014/ERC000014.json index 790db858..fff6ad51 100644 --- a/templates/ERC000014/ERC000014.json +++ b/templates/ERC000014/ERC000014.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000014/README.md b/templates/ERC000014/README.md index 48527be0..34fcbb64 100644 --- a/templates/ERC000014/README.md +++ b/templates/ERC000014/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000014/metadata_template_ERC000014.xlsx b/templates/ERC000014/metadata_template_ERC000014.xlsx index 3c12a28e..ba43b77f 100644 Binary files a/templates/ERC000014/metadata_template_ERC000014.xlsx and b/templates/ERC000014/metadata_template_ERC000014.xlsx differ diff --git a/templates/ERC000015/ERC000015.json b/templates/ERC000015/ERC000015.json index dc3e58e6..82ee07e9 100644 --- a/templates/ERC000015/ERC000015.json +++ b/templates/ERC000015/ERC000015.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000015/README.md b/templates/ERC000015/README.md index d035d982..99bb667f 100644 --- a/templates/ERC000015/README.md +++ b/templates/ERC000015/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000015/metadata_template_ERC000015.xlsx b/templates/ERC000015/metadata_template_ERC000015.xlsx index 7c33b466..cc606ea0 100644 Binary files a/templates/ERC000015/metadata_template_ERC000015.xlsx and b/templates/ERC000015/metadata_template_ERC000015.xlsx differ diff --git a/templates/ERC000016/ERC000016.json b/templates/ERC000016/ERC000016.json index 42fa0864..4cedfccc 100644 --- a/templates/ERC000016/ERC000016.json +++ b/templates/ERC000016/ERC000016.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000016/README.md b/templates/ERC000016/README.md index e1a599ce..6e2f825c 100644 --- a/templates/ERC000016/README.md +++ b/templates/ERC000016/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000016/metadata_template_ERC000016.xlsx b/templates/ERC000016/metadata_template_ERC000016.xlsx index a218af5b..6537b93c 100644 Binary files a/templates/ERC000016/metadata_template_ERC000016.xlsx and b/templates/ERC000016/metadata_template_ERC000016.xlsx differ diff --git a/templates/ERC000017/ERC000017.json b/templates/ERC000017/ERC000017.json index 44e3d3eb..29bae881 100644 --- a/templates/ERC000017/ERC000017.json +++ b/templates/ERC000017/ERC000017.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000017/README.md b/templates/ERC000017/README.md index 764c0f9e..16b4c6f4 100644 --- a/templates/ERC000017/README.md +++ b/templates/ERC000017/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000017/metadata_template_ERC000017.xlsx b/templates/ERC000017/metadata_template_ERC000017.xlsx index e5f57a0c..bce831d7 100644 Binary files a/templates/ERC000017/metadata_template_ERC000017.xlsx and b/templates/ERC000017/metadata_template_ERC000017.xlsx differ diff --git a/templates/ERC000018/ERC000018.json b/templates/ERC000018/ERC000018.json index 140c3f27..88805437 100644 --- a/templates/ERC000018/ERC000018.json +++ b/templates/ERC000018/ERC000018.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000018/README.md b/templates/ERC000018/README.md index 8a17bf48..0930442d 100644 --- a/templates/ERC000018/README.md +++ b/templates/ERC000018/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000018/metadata_template_ERC000018.xlsx b/templates/ERC000018/metadata_template_ERC000018.xlsx index 0bed8a92..be341c06 100644 Binary files a/templates/ERC000018/metadata_template_ERC000018.xlsx and b/templates/ERC000018/metadata_template_ERC000018.xlsx differ diff --git a/templates/ERC000019/ERC000019.json b/templates/ERC000019/ERC000019.json index f8ca04fd..27ca914c 100644 --- a/templates/ERC000019/ERC000019.json +++ b/templates/ERC000019/ERC000019.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000019/README.md b/templates/ERC000019/README.md index 2b3a1495..ea98ff50 100644 --- a/templates/ERC000019/README.md +++ b/templates/ERC000019/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000019/metadata_template_ERC000019.xlsx b/templates/ERC000019/metadata_template_ERC000019.xlsx index 6f1d6c20..11d1d103 100644 Binary files a/templates/ERC000019/metadata_template_ERC000019.xlsx and b/templates/ERC000019/metadata_template_ERC000019.xlsx differ diff --git a/templates/ERC000020/ERC000020.json b/templates/ERC000020/ERC000020.json index 3606dd5a..547661ad 100644 --- a/templates/ERC000020/ERC000020.json +++ b/templates/ERC000020/ERC000020.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000020/README.md b/templates/ERC000020/README.md index 9dc52ee3..a8027d1c 100644 --- a/templates/ERC000020/README.md +++ b/templates/ERC000020/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000020/metadata_template_ERC000020.xlsx b/templates/ERC000020/metadata_template_ERC000020.xlsx index 4faa51fa..017f13b7 100644 Binary files a/templates/ERC000020/metadata_template_ERC000020.xlsx and b/templates/ERC000020/metadata_template_ERC000020.xlsx differ diff --git a/templates/ERC000021/ERC000021.json b/templates/ERC000021/ERC000021.json index f4539984..a76e9e26 100644 --- a/templates/ERC000021/ERC000021.json +++ b/templates/ERC000021/ERC000021.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000021/README.md b/templates/ERC000021/README.md index c44e2633..a29604e3 100644 --- a/templates/ERC000021/README.md +++ b/templates/ERC000021/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000021/metadata_template_ERC000021.xlsx b/templates/ERC000021/metadata_template_ERC000021.xlsx index c59b4a7b..4871b509 100644 Binary files a/templates/ERC000021/metadata_template_ERC000021.xlsx and b/templates/ERC000021/metadata_template_ERC000021.xlsx differ diff --git a/templates/ERC000022/ERC000022.json b/templates/ERC000022/ERC000022.json index 6861b97b..72bc4432 100644 --- a/templates/ERC000022/ERC000022.json +++ b/templates/ERC000022/ERC000022.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000022/README.md b/templates/ERC000022/README.md index 6286da32..40053977 100644 --- a/templates/ERC000022/README.md +++ b/templates/ERC000022/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000022/metadata_template_ERC000022.xlsx b/templates/ERC000022/metadata_template_ERC000022.xlsx index c2da040d..23a1e24e 100644 Binary files a/templates/ERC000022/metadata_template_ERC000022.xlsx and b/templates/ERC000022/metadata_template_ERC000022.xlsx differ diff --git a/templates/ERC000023/ERC000023.json b/templates/ERC000023/ERC000023.json index 066ace3d..602c43c9 100644 --- a/templates/ERC000023/ERC000023.json +++ b/templates/ERC000023/ERC000023.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000023/README.md b/templates/ERC000023/README.md index c28ba257..9e52bb4f 100644 --- a/templates/ERC000023/README.md +++ b/templates/ERC000023/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000023/metadata_template_ERC000023.xlsx b/templates/ERC000023/metadata_template_ERC000023.xlsx index 691a0ce8..080b9900 100644 Binary files a/templates/ERC000023/metadata_template_ERC000023.xlsx and b/templates/ERC000023/metadata_template_ERC000023.xlsx differ diff --git a/templates/ERC000024/ERC000024.json b/templates/ERC000024/ERC000024.json index 62bd9b5a..c78ce8dc 100644 --- a/templates/ERC000024/ERC000024.json +++ b/templates/ERC000024/ERC000024.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000024/README.md b/templates/ERC000024/README.md index cf02b188..669ece89 100644 --- a/templates/ERC000024/README.md +++ b/templates/ERC000024/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000024/metadata_template_ERC000024.xlsx b/templates/ERC000024/metadata_template_ERC000024.xlsx index 13a9736a..948c920c 100644 Binary files a/templates/ERC000024/metadata_template_ERC000024.xlsx and b/templates/ERC000024/metadata_template_ERC000024.xlsx differ diff --git a/templates/ERC000025/ERC000025.json b/templates/ERC000025/ERC000025.json index b4e34909..9eee245b 100644 --- a/templates/ERC000025/ERC000025.json +++ b/templates/ERC000025/ERC000025.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000025/README.md b/templates/ERC000025/README.md index 35a417ce..87df4e7a 100644 --- a/templates/ERC000025/README.md +++ b/templates/ERC000025/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000025/metadata_template_ERC000025.xlsx b/templates/ERC000025/metadata_template_ERC000025.xlsx index 7730245b..a7405ce5 100644 Binary files a/templates/ERC000025/metadata_template_ERC000025.xlsx and b/templates/ERC000025/metadata_template_ERC000025.xlsx differ diff --git a/templates/ERC000027/ERC000027.json b/templates/ERC000027/ERC000027.json index fb1f5ee6..7e0a1c87 100644 --- a/templates/ERC000027/ERC000027.json +++ b/templates/ERC000027/ERC000027.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000027/README.md b/templates/ERC000027/README.md index 45b4533f..8cedc69e 100644 --- a/templates/ERC000027/README.md +++ b/templates/ERC000027/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000027/metadata_template_ERC000027.xlsx b/templates/ERC000027/metadata_template_ERC000027.xlsx index ac232e1d..c099d6bb 100644 Binary files a/templates/ERC000027/metadata_template_ERC000027.xlsx and b/templates/ERC000027/metadata_template_ERC000027.xlsx differ diff --git a/templates/ERC000028/ERC000028.json b/templates/ERC000028/ERC000028.json index 43374047..6468f6c3 100644 --- a/templates/ERC000028/ERC000028.json +++ b/templates/ERC000028/ERC000028.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000028/README.md b/templates/ERC000028/README.md index 214a937c..656b5ae1 100644 --- a/templates/ERC000028/README.md +++ b/templates/ERC000028/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000028/metadata_template_ERC000028.xlsx b/templates/ERC000028/metadata_template_ERC000028.xlsx index 2059e1fa..486e4049 100644 Binary files a/templates/ERC000028/metadata_template_ERC000028.xlsx and b/templates/ERC000028/metadata_template_ERC000028.xlsx differ diff --git a/templates/ERC000029/ERC000029.json b/templates/ERC000029/ERC000029.json index 03b9c8e7..4f3b5a0c 100644 --- a/templates/ERC000029/ERC000029.json +++ b/templates/ERC000029/ERC000029.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000029/README.md b/templates/ERC000029/README.md index db4e6a9f..b80062b4 100644 --- a/templates/ERC000029/README.md +++ b/templates/ERC000029/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000029/metadata_template_ERC000029.xlsx b/templates/ERC000029/metadata_template_ERC000029.xlsx index bfc6c1ca..5a8b7fae 100644 Binary files a/templates/ERC000029/metadata_template_ERC000029.xlsx and b/templates/ERC000029/metadata_template_ERC000029.xlsx differ diff --git a/templates/ERC000030/ERC000030.json b/templates/ERC000030/ERC000030.json index 1c25d85f..ef61f5c3 100644 --- a/templates/ERC000030/ERC000030.json +++ b/templates/ERC000030/ERC000030.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000030/README.md b/templates/ERC000030/README.md index ba8bef09..0fcc9f64 100644 --- a/templates/ERC000030/README.md +++ b/templates/ERC000030/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000030/metadata_template_ERC000030.xlsx b/templates/ERC000030/metadata_template_ERC000030.xlsx index 988bab14..6c152ea6 100644 Binary files a/templates/ERC000030/metadata_template_ERC000030.xlsx and b/templates/ERC000030/metadata_template_ERC000030.xlsx differ diff --git a/templates/ERC000031/ERC000031.json b/templates/ERC000031/ERC000031.json index 1401e3a6..8e6cfd21 100644 --- a/templates/ERC000031/ERC000031.json +++ b/templates/ERC000031/ERC000031.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000031/README.md b/templates/ERC000031/README.md index 4747d108..4443bdbe 100644 --- a/templates/ERC000031/README.md +++ b/templates/ERC000031/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000031/metadata_template_ERC000031.xlsx b/templates/ERC000031/metadata_template_ERC000031.xlsx index 30ce8b52..966a3a87 100644 Binary files a/templates/ERC000031/metadata_template_ERC000031.xlsx and b/templates/ERC000031/metadata_template_ERC000031.xlsx differ diff --git a/templates/ERC000032/ERC000032.json b/templates/ERC000032/ERC000032.json index 67e59b17..2e90d3e8 100644 --- a/templates/ERC000032/ERC000032.json +++ b/templates/ERC000032/ERC000032.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000032/README.md b/templates/ERC000032/README.md index be9c1126..db7dfaa0 100644 --- a/templates/ERC000032/README.md +++ b/templates/ERC000032/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000032/metadata_template_ERC000032.xlsx b/templates/ERC000032/metadata_template_ERC000032.xlsx index bc3f4f2a..c04ab944 100644 Binary files a/templates/ERC000032/metadata_template_ERC000032.xlsx and b/templates/ERC000032/metadata_template_ERC000032.xlsx differ diff --git a/templates/ERC000033/ERC000033.json b/templates/ERC000033/ERC000033.json index 7ba2cf53..130b717d 100644 --- a/templates/ERC000033/ERC000033.json +++ b/templates/ERC000033/ERC000033.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000033/README.md b/templates/ERC000033/README.md index ebd74d06..aede8ebf 100644 --- a/templates/ERC000033/README.md +++ b/templates/ERC000033/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000033/metadata_template_ERC000033.xlsx b/templates/ERC000033/metadata_template_ERC000033.xlsx index 07d72a37..4f493267 100644 Binary files a/templates/ERC000033/metadata_template_ERC000033.xlsx and b/templates/ERC000033/metadata_template_ERC000033.xlsx differ diff --git a/templates/ERC000034/ERC000034.json b/templates/ERC000034/ERC000034.json index e48fde1c..d2f7b1be 100644 --- a/templates/ERC000034/ERC000034.json +++ b/templates/ERC000034/ERC000034.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000034/README.md b/templates/ERC000034/README.md index 1004aa38..e8a54ba8 100644 --- a/templates/ERC000034/README.md +++ b/templates/ERC000034/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000034/metadata_template_ERC000034.xlsx b/templates/ERC000034/metadata_template_ERC000034.xlsx index 1f6df55d..912845d9 100644 Binary files a/templates/ERC000034/metadata_template_ERC000034.xlsx and b/templates/ERC000034/metadata_template_ERC000034.xlsx differ diff --git a/templates/ERC000035/ERC000035.json b/templates/ERC000035/ERC000035.json index e9b91015..4c0ec1fb 100644 --- a/templates/ERC000035/ERC000035.json +++ b/templates/ERC000035/ERC000035.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000035/README.md b/templates/ERC000035/README.md index 877cbd59..98018000 100644 --- a/templates/ERC000035/README.md +++ b/templates/ERC000035/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000035/metadata_template_ERC000035.xlsx b/templates/ERC000035/metadata_template_ERC000035.xlsx index 88854c09..d3cc9718 100644 Binary files a/templates/ERC000035/metadata_template_ERC000035.xlsx and b/templates/ERC000035/metadata_template_ERC000035.xlsx differ diff --git a/templates/ERC000036/ERC000036.json b/templates/ERC000036/ERC000036.json index 89074e31..964f2c8f 100644 --- a/templates/ERC000036/ERC000036.json +++ b/templates/ERC000036/ERC000036.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000036/README.md b/templates/ERC000036/README.md index 54f664c5..5fa179ff 100644 --- a/templates/ERC000036/README.md +++ b/templates/ERC000036/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000036/metadata_template_ERC000036.xlsx b/templates/ERC000036/metadata_template_ERC000036.xlsx index cf138735..68d3f3ab 100644 Binary files a/templates/ERC000036/metadata_template_ERC000036.xlsx and b/templates/ERC000036/metadata_template_ERC000036.xlsx differ diff --git a/templates/ERC000037/ERC000037.json b/templates/ERC000037/ERC000037.json index 9f72eaac..13818775 100644 --- a/templates/ERC000037/ERC000037.json +++ b/templates/ERC000037/ERC000037.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000037/README.md b/templates/ERC000037/README.md index e5e7c644..c66f9e84 100644 --- a/templates/ERC000037/README.md +++ b/templates/ERC000037/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000037/metadata_template_ERC000037.xlsx b/templates/ERC000037/metadata_template_ERC000037.xlsx index 45c40c68..c237c6bc 100644 Binary files a/templates/ERC000037/metadata_template_ERC000037.xlsx and b/templates/ERC000037/metadata_template_ERC000037.xlsx differ diff --git a/templates/ERC000038/ERC000038.json b/templates/ERC000038/ERC000038.json index c17b3346..9bde7ed5 100644 --- a/templates/ERC000038/ERC000038.json +++ b/templates/ERC000038/ERC000038.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000038/README.md b/templates/ERC000038/README.md index 025d193b..66bc98f2 100644 --- a/templates/ERC000038/README.md +++ b/templates/ERC000038/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000038/metadata_template_ERC000038.xlsx b/templates/ERC000038/metadata_template_ERC000038.xlsx index b34880a4..00393540 100644 Binary files a/templates/ERC000038/metadata_template_ERC000038.xlsx and b/templates/ERC000038/metadata_template_ERC000038.xlsx differ diff --git a/templates/ERC000039/ERC000039.json b/templates/ERC000039/ERC000039.json index c3d23a66..3c13fbb2 100644 --- a/templates/ERC000039/ERC000039.json +++ b/templates/ERC000039/ERC000039.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000039/README.md b/templates/ERC000039/README.md index 5bcf75d3..a96ca189 100644 --- a/templates/ERC000039/README.md +++ b/templates/ERC000039/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000039/metadata_template_ERC000039.xlsx b/templates/ERC000039/metadata_template_ERC000039.xlsx index 51ab3bac..e336f217 100644 Binary files a/templates/ERC000039/metadata_template_ERC000039.xlsx and b/templates/ERC000039/metadata_template_ERC000039.xlsx differ diff --git a/templates/ERC000040/ERC000040.json b/templates/ERC000040/ERC000040.json index 6d71cba4..5928262e 100644 --- a/templates/ERC000040/ERC000040.json +++ b/templates/ERC000040/ERC000040.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000040/README.md b/templates/ERC000040/README.md index 4f0f45f9..c25234cf 100644 --- a/templates/ERC000040/README.md +++ b/templates/ERC000040/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000040/metadata_template_ERC000040.xlsx b/templates/ERC000040/metadata_template_ERC000040.xlsx index 1db8d050..4424fb33 100644 Binary files a/templates/ERC000040/metadata_template_ERC000040.xlsx and b/templates/ERC000040/metadata_template_ERC000040.xlsx differ diff --git a/templates/ERC000041/ERC000041.json b/templates/ERC000041/ERC000041.json index d2a345c1..6917624c 100644 --- a/templates/ERC000041/ERC000041.json +++ b/templates/ERC000041/ERC000041.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000041/README.md b/templates/ERC000041/README.md index 020c89f5..2982bea4 100644 --- a/templates/ERC000041/README.md +++ b/templates/ERC000041/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000041/metadata_template_ERC000041.xlsx b/templates/ERC000041/metadata_template_ERC000041.xlsx index f137646f..1043d040 100644 Binary files a/templates/ERC000041/metadata_template_ERC000041.xlsx and b/templates/ERC000041/metadata_template_ERC000041.xlsx differ diff --git a/templates/ERC000043/ERC000043.json b/templates/ERC000043/ERC000043.json index d33111c1..e7960e3a 100644 --- a/templates/ERC000043/ERC000043.json +++ b/templates/ERC000043/ERC000043.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000043/README.md b/templates/ERC000043/README.md index e213183f..1864b8b2 100644 --- a/templates/ERC000043/README.md +++ b/templates/ERC000043/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000043/metadata_template_ERC000043.xlsx b/templates/ERC000043/metadata_template_ERC000043.xlsx index 08bce63f..cd63c34c 100644 Binary files a/templates/ERC000043/metadata_template_ERC000043.xlsx and b/templates/ERC000043/metadata_template_ERC000043.xlsx differ diff --git a/templates/ERC000044/ERC000044.json b/templates/ERC000044/ERC000044.json index 822d275e..84c0457d 100644 --- a/templates/ERC000044/ERC000044.json +++ b/templates/ERC000044/ERC000044.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000044/README.md b/templates/ERC000044/README.md index b6545c7c..4d5f3455 100644 --- a/templates/ERC000044/README.md +++ b/templates/ERC000044/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000044/metadata_template_ERC000044.xlsx b/templates/ERC000044/metadata_template_ERC000044.xlsx index 886414b9..8dcd54fe 100644 Binary files a/templates/ERC000044/metadata_template_ERC000044.xlsx and b/templates/ERC000044/metadata_template_ERC000044.xlsx differ diff --git a/templates/ERC000045/ERC000045.json b/templates/ERC000045/ERC000045.json index e652762b..154385a8 100644 --- a/templates/ERC000045/ERC000045.json +++ b/templates/ERC000045/ERC000045.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000045/README.md b/templates/ERC000045/README.md index 424d59e5..90bfea6f 100644 --- a/templates/ERC000045/README.md +++ b/templates/ERC000045/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000045/metadata_template_ERC000045.xlsx b/templates/ERC000045/metadata_template_ERC000045.xlsx index 43259fe9..249c36bc 100644 Binary files a/templates/ERC000045/metadata_template_ERC000045.xlsx and b/templates/ERC000045/metadata_template_ERC000045.xlsx differ diff --git a/templates/ERC000047/ERC000047.json b/templates/ERC000047/ERC000047.json index bfb7039d..6d86f3f1 100644 --- a/templates/ERC000047/ERC000047.json +++ b/templates/ERC000047/ERC000047.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000047/README.md b/templates/ERC000047/README.md index 576e6383..8283e6da 100644 --- a/templates/ERC000047/README.md +++ b/templates/ERC000047/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000047/metadata_template_ERC000047.xlsx b/templates/ERC000047/metadata_template_ERC000047.xlsx index 0f921a58..dc62dc49 100644 Binary files a/templates/ERC000047/metadata_template_ERC000047.xlsx and b/templates/ERC000047/metadata_template_ERC000047.xlsx differ diff --git a/templates/ERC000048/ERC000048.json b/templates/ERC000048/ERC000048.json index acd2fd72..a2ba053e 100644 --- a/templates/ERC000048/ERC000048.json +++ b/templates/ERC000048/ERC000048.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000048/README.md b/templates/ERC000048/README.md index 99f2fa4a..04c5f259 100644 --- a/templates/ERC000048/README.md +++ b/templates/ERC000048/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000048/metadata_template_ERC000048.xlsx b/templates/ERC000048/metadata_template_ERC000048.xlsx index 9d69785e..ac81ed31 100644 Binary files a/templates/ERC000048/metadata_template_ERC000048.xlsx and b/templates/ERC000048/metadata_template_ERC000048.xlsx differ diff --git a/templates/ERC000049/ERC000049.json b/templates/ERC000049/ERC000049.json index d48763ad..91572c1e 100644 --- a/templates/ERC000049/ERC000049.json +++ b/templates/ERC000049/ERC000049.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000049/README.md b/templates/ERC000049/README.md index e58e4197..b0603d3e 100644 --- a/templates/ERC000049/README.md +++ b/templates/ERC000049/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000049/metadata_template_ERC000049.xlsx b/templates/ERC000049/metadata_template_ERC000049.xlsx index 8e164952..2b1de7d7 100644 Binary files a/templates/ERC000049/metadata_template_ERC000049.xlsx and b/templates/ERC000049/metadata_template_ERC000049.xlsx differ diff --git a/templates/ERC000050/ERC000050.json b/templates/ERC000050/ERC000050.json index 84d721c3..befb2805 100644 --- a/templates/ERC000050/ERC000050.json +++ b/templates/ERC000050/ERC000050.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000050/README.md b/templates/ERC000050/README.md index 9901eb09..4a834fef 100644 --- a/templates/ERC000050/README.md +++ b/templates/ERC000050/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000050/metadata_template_ERC000050.xlsx b/templates/ERC000050/metadata_template_ERC000050.xlsx index 0b2c810f..25de90d4 100644 Binary files a/templates/ERC000050/metadata_template_ERC000050.xlsx and b/templates/ERC000050/metadata_template_ERC000050.xlsx differ diff --git a/templates/ERC000051/ERC000051.json b/templates/ERC000051/ERC000051.json index 42e42d47..b36ea481 100644 --- a/templates/ERC000051/ERC000051.json +++ b/templates/ERC000051/ERC000051.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000051/README.md b/templates/ERC000051/README.md index fde984de..03912f83 100644 --- a/templates/ERC000051/README.md +++ b/templates/ERC000051/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000051/metadata_template_ERC000051.xlsx b/templates/ERC000051/metadata_template_ERC000051.xlsx index f7d8c9f9..71d0b747 100644 Binary files a/templates/ERC000051/metadata_template_ERC000051.xlsx and b/templates/ERC000051/metadata_template_ERC000051.xlsx differ diff --git a/templates/ERC000052/ERC000052.json b/templates/ERC000052/ERC000052.json index 6354d9df..18a6a3f9 100644 --- a/templates/ERC000052/ERC000052.json +++ b/templates/ERC000052/ERC000052.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000052/README.md b/templates/ERC000052/README.md index bcc4c833..f3b4c9cf 100644 --- a/templates/ERC000052/README.md +++ b/templates/ERC000052/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000052/metadata_template_ERC000052.xlsx b/templates/ERC000052/metadata_template_ERC000052.xlsx index bc40aca3..997bed9e 100644 Binary files a/templates/ERC000052/metadata_template_ERC000052.xlsx and b/templates/ERC000052/metadata_template_ERC000052.xlsx differ diff --git a/templates/ERC000053/ERC000053.json b/templates/ERC000053/ERC000053.json index 3d9ec541..f693cc82 100644 --- a/templates/ERC000053/ERC000053.json +++ b/templates/ERC000053/ERC000053.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000053/README.md b/templates/ERC000053/README.md index 6a1c71d9..57477a37 100644 --- a/templates/ERC000053/README.md +++ b/templates/ERC000053/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000053/metadata_template_ERC000053.xlsx b/templates/ERC000053/metadata_template_ERC000053.xlsx index 175cd0a4..1f538a56 100644 Binary files a/templates/ERC000053/metadata_template_ERC000053.xlsx and b/templates/ERC000053/metadata_template_ERC000053.xlsx differ diff --git a/templates/ERC000055/ERC000055.json b/templates/ERC000055/ERC000055.json index 834108c3..8e828916 100644 --- a/templates/ERC000055/ERC000055.json +++ b/templates/ERC000055/ERC000055.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000055/README.md b/templates/ERC000055/README.md index 3e6cd6df..88253052 100644 --- a/templates/ERC000055/README.md +++ b/templates/ERC000055/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000055/metadata_template_ERC000055.xlsx b/templates/ERC000055/metadata_template_ERC000055.xlsx index 7c86cd41..e28510cc 100644 Binary files a/templates/ERC000055/metadata_template_ERC000055.xlsx and b/templates/ERC000055/metadata_template_ERC000055.xlsx differ diff --git a/templates/ERC000056/ERC000056.json b/templates/ERC000056/ERC000056.json index 2ef35aee..b6b23296 100644 --- a/templates/ERC000056/ERC000056.json +++ b/templates/ERC000056/ERC000056.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000056/README.md b/templates/ERC000056/README.md index b9839422..a6a4f5a1 100644 --- a/templates/ERC000056/README.md +++ b/templates/ERC000056/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000056/metadata_template_ERC000056.xlsx b/templates/ERC000056/metadata_template_ERC000056.xlsx index 8d0d477f..f002c370 100644 Binary files a/templates/ERC000056/metadata_template_ERC000056.xlsx and b/templates/ERC000056/metadata_template_ERC000056.xlsx differ diff --git a/templates/ERC000057/ERC000057.json b/templates/ERC000057/ERC000057.json index 3bf5d9cd..9e3f3dda 100644 --- a/templates/ERC000057/ERC000057.json +++ b/templates/ERC000057/ERC000057.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000057/README.md b/templates/ERC000057/README.md index 97fee0b2..ffb5ad15 100644 --- a/templates/ERC000057/README.md +++ b/templates/ERC000057/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000057/metadata_template_ERC000057.xlsx b/templates/ERC000057/metadata_template_ERC000057.xlsx index 51a1f705..9178a6be 100644 Binary files a/templates/ERC000057/metadata_template_ERC000057.xlsx and b/templates/ERC000057/metadata_template_ERC000057.xlsx differ diff --git a/templates/ERC000058/ERC000058.json b/templates/ERC000058/ERC000058.json index 383610f3..4c572252 100644 --- a/templates/ERC000058/ERC000058.json +++ b/templates/ERC000058/ERC000058.json @@ -79,7 +79,7 @@ }, { "name": "title", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Short text that can be used to call out experiment records in searches or in displays. This element is technically optional but should be used for all new records.", "units": "", "regex": "", @@ -106,7 +106,7 @@ }, { "name": "design_description", - "cardinality": "optional", + "cardinality": "mandatory", "description": "Goal and setup of the individual library including library was constructed.", "units": "", "regex": "", diff --git a/templates/ERC000058/README.md b/templates/ERC000058/README.md index d7e1924f..0dcf398d 100644 --- a/templates/ERC000058/README.md +++ b/templates/ERC000058/README.md @@ -21,10 +21,10 @@ An experiment object serves as a metadata record encapsulating essential details | Field name | Cardinality | Description | Controlled vocabulary | |:------------------------------|:--------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| | alias | mandatory | Unique identificator for each experiment. this is used to link runs to experiments. | | -| title | optional | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | +| title | mandatory | Short text that can be used to call out experiment records in searches or in displays. this element is technically optional but should be used for all new records. | | | study_alias | mandatory | Identifies the parent study. (from study metadata) | | | sample_alias | mandatory | (from sample metadata) | | -| design_description | optional | Goal and setup of the individual library including library was constructed. | | +| design_description | mandatory | Goal and setup of the individual library including library was constructed. | | | library_name | optional | The submitter's name for this library. | | | library_strategy | mandatory | Sequencing technique intended for this library. | WGS, WGA, WXS, RNA-Seq, ssRNA-seq, snRNA-seq, miRNA-Seq, ncRNA-Seq, FL-cDNA, EST, Hi-C, ATAC-seq, WCS, RAD-Seq, CLONE, POOLCLONE, AMPLICON, CLONEEND, FINISHING, ChIP-Seq, MNase-Seq, DNase-Hypersensitivity, Bisulfite-Seq, CTS, MRE-Seq, MeDIP-Seq, MBD-Seq, Tn-Seq, VALIDATION, FAIRE-seq, SELEX, RIP-Seq, ChIA-PET, Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, NOMe-Seq, ChM-Seq, GBS, Ribo-Seq, OTHER | | library_source | mandatory | The library_source specifies the type of source material that is being sequenced. | GENOMIC, GENOMIC SINGLE CELL, TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, METAGENOMIC, METATRANSCRIPTOMIC, SYNTHETIC, VIRAL RNA, OTHER | diff --git a/templates/ERC000058/metadata_template_ERC000058.xlsx b/templates/ERC000058/metadata_template_ERC000058.xlsx index c962a24e..89b00327 100644 Binary files a/templates/ERC000058/metadata_template_ERC000058.xlsx and b/templates/ERC000058/metadata_template_ERC000058.xlsx differ