DESCRIPTION

Package: TMSig
Type: Package
Title: Tools for Molecular Signatures
Version: 0.99.3
Date: 2024-10-17
Authors@R: 
    c(
      person(given = "Tyler", family = "Sagendorf", 
             email = "tyler.sagendorf@pnnl.gov",
             comment = c(ORCID = "0000-0003-1552-4870"),
             role = c("aut", "cre")),
      person(given = "Di", family = "Wu", role = "ctb"),
      person(given = "Gordon", family = "Smyth", role = "ctb")
    )
Description: The TMSig package contains tools to prepare, analyze, and visualize
    named lists of sets, with an emphasis on molecular signatures (such as gene
    or kinase sets). It includes fast, memory efficient functions to construct
    sparse incidence and similarity matrices and filter, cluster, invert, and 
    decompose sets. Additionally, bubble heatmaps can be created to visualize 
    the results of any differential or molecular signatures analysis.
License: GPL (>= 3)
URL: https://github.com/EMSL-Computing/TMSig
BugReports: https://github.com/EMSL-Computing/TMSig/issues
Encoding: UTF-8
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
biocViews: 
    Clustering, GeneSetEnrichment, GraphAndNetwork, Pathways, Visualization
Depends:
    R (>= 4.4.0),
    limma
Imports:
    circlize,
    ComplexHeatmap,
    data.table,
    grDevices,
    grid,
    GSEABase,
    Matrix,
    methods,
    stats,
    utils
Suggests: 
    BiocStyle,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0)
Config/testthat/edition: 3