.pre-commit-config.yaml

repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.6.0
    hooks:
      - id: trailing-whitespace
      - id: end-of-file-fixer

  - repo: https://github.com/charliermarsh/ruff-pre-commit
    rev: v0.5.5
    hooks:
      - id: ruff
        args: [--fix]

  - repo: https://github.com/psf/black
    rev: 24.4.2
    hooks:
    - id: black
      language_version: python3

  - repo: https://github.com/keewis/blackdoc
    rev: v0.3.9
    hooks:
    - id: blackdoc
      additional_dependencies: ["black[jupyter]"]

  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: v1.11.0
    hooks:
    - id: mypy
      exclude: tests

  - repo: https://github.com/codespell-project/codespell
    rev: v2.3.0
    hooks:
    - id: codespell
      types_or: [python, markdown]
      additional_dependencies: [tomli]

  - repo: https://github.com/lorenzwalthert/precommit
    rev: v0.4.3
    hooks:
    -   id: lintr
        args: [--warn_only]
        verbose: true
        additional_dependencies:
          - r-lib/lintr
          - any::cyclocomp
    -   id: style-files
        args: [--scope=line_breaks]
    -   id: no-browser-statement
    -   id: no-print-statement
        exclude: >
          (?x)^(
          data_preprocessing/renv/.*
          )$
    -   id: no-debug-statement
    -   id: spell-check
        exclude: >
          (?x)^(
          .*\.[rR]|
          .*\.feather|
          .*\.jpeg|
          .*\.pdf|
          .*\.png|
          .*\.py|
          .*\.RData|
          .*\.rds|
          .*\.Rds|
          .*\.Rproj|
          .*\.sh|
          (.*/|)\.gitignore|
          (.*/|)\.pre-commit-.*|
          (.*/|)\.Rbuildignore|
          (.*/|)\.Renviron|
          (.*/|)\.Rprofile|
          (.*/|)\.travis\.yml|
          (.*/|)appveyor\.yml|
          (.*/|)NAMESPACE|
          (.*/|)renv/settings\.dcf|
          (.*/|)renv\.lock|
          (.*/|)WORDLIST|
          (.*/|)poetry\.lock|
          (.*/|)pyproject\.toml|
          \.github/workflows/.*|
          data_preprocessing/data/.*|
          inst/hooks/.*|
          inst/pre-commit-.*|
          inst/usethis-legacy-hook|
          LICENSE|
          data_preprocessing/renv/.*|
          revdep/.*|
          tests/testthat/in/.*|
          )$