Code

Include dsb step#13

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aricht wants to merge 17 commits intomainETH-NEXUS/gExcite_pipeline:mainfrom include_dsbETH-NEXUS/gExcite_pipeline:include_dsbCopy head branch name to clipboard

+1,591-397

Commits

Commits on Oct 9, 2023

• [FEAT] Add new script dsb_normalize_adt.R

  Show description for 08810d9
  

  Anne Bertolini

  committed
  08810d9

• [WIP] Add copy of analyse_citeseq.R to be adapted to dsb normalization

  

  Anne Bertolini

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  57908e0

• [DOC] Run "style_file" on analyse_citeseq_after_dsb.R

  

  Anne Bertolini

  committed
  0b5a7bc

Commits on Oct 10, 2023

• [FEAT] Adapt script analyse_citeseq_after_dsb.R

  Show description for ea037bc
  

  Anne Bertolini

  committed
  ea037bc

• [FEAT] Include changes with dsb normalization

  Show description for 2a0ef71
  

  Anne Bertolini

  committed
  2a0ef71

• [FEAT] Add rule for dsb normalization of ADT counts

  

  Anne Bertolini

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  4b79958

• [FEAT] After cellranger keep compressed and decompressed results

  

  Anne Bertolini

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  9a8a9c5

Commits on Oct 12, 2023

• [FEAT] Save h5 file in analyse_citeseq_dsb.R

  Show description for 3bfa548
  

  Anne Bertolini

  committed
  3bfa548

Commits on Jan 4, 2024

• [FIX] Include package in script dsb_normalize_adt.R

  Show description for 7169a04
  

  Anne Bertolini

  committed
  7169a04

Commits on Jan 9, 2024

• [FIX] parameter in script analyse_citeseq_dsb.R

  

  Anne Bertolini

  committed
  1dbaf4f

Commits on Jan 11, 2024

• [WIP] Add draft change CHANGELOG.md

  

  Anne Bertolini

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  695ada1

• [FEAT] Change dsb_normalize_adt to use singularity not conda

  Show description for 6c376c5
  

  Anne Bertolini

  committed
  6c376c5

Commits on Jan 18, 2024

• [DOC] Include dsb correction as default step for experiments

  Show description for 9043113
  

  Anne Bertolini

  committed
  9043113

Commits on Jan 22, 2024

• [DOC] Add link to dsb_r-base_4.2.3.sif in README

  

  Anne Bertolini

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  64a2f63

• [DOC] Adapt section about dsb and cellranger in README

  

  Anne Bertolini

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  a3d7b6d

Commits on Oct 29, 2024

• Merge branch 'main' into include_dsb

  

  Anne Bertolini

  committed
  8a0c086

• [DOC] Beautify rulegraphs

  

  Anne Bertolini

  committed
  8bdecbe