fix: adjusting the sctransform mem resources

ETH-NEXUS · Oct 8, 2024 · 775e973 · 775e973
1 parent e1dc06f
commit 775e973
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/scAmpi_basic_rules.smk b/workflow/rules/scAmpi_basic_rules.smk
@@ -279,7 +279,7 @@ rule sctransform_preprocessing:
     conda:
         "../envs/sctransform_preprocessing.yaml"
     resources:
-        mem_mb=lambda wc, input: min(4000 + 20 * input.size_mb, max_mem_mb),
+        mem_mb=lambda wc, input: min(8000 + 20 * input.size_mb, max_mem_mb),
         runtime=config["computingResources"]["runtime"]["medium"],
     threads: config["computingResources"]["threads"]["medium"]
     log: