v0.10.0-beta

Merge #1241 from ElucidataInc/alpha_fixes

Alpha fixes

v0.10.0-alpha

Merge #1208 from ElucidataInc/ftr_autoupdate

[Ftr] Auto-update release builds

v0.9.1

FIxes

• Fix MS2 events not being picked individually for each sample #1187
• Update mass search when compounds are selected #1103

v0.9.0

Features

• Enable feature annotation using a compound database (#1113)
• Load and manage compound databases with a new "Library Manager" widget (#1130)
• Enable reading spectral libraries in mascot generic format (#1147)

UI/UX

• Move isotope detection options and switches to a dedicated "Isotope Detection" dialog (#185)
• Add a support dialog with helpful links and optional user-session tagging.
• Allow disregarding the global tolerance for EIC using a switch (#237)
• Enable sorting (along with drag-and-drop) in sample list (#937)
• Keep RT window constant for compound matches (#1128)
• Enable comparing raw MS2 spectra with the reference (#1126)
• Prevent window resize over subsequent sessions (#820)
• Use database name for naming peak tables
• Notify about ability to load zlib compressed data
• Reformat CLI output and remove responses from processes/threads

Bug FIxes

• Use correct slice for isotope-parent correlation (#861)
• Reactivate EPI elements after failure (#1109)
• Fix isotope child not being removed when deleted from table (#261)
• Export peak rows for each sample used to detect a peak group (#1141)
• Add sample number only once in CSV (#696)
• Show error and exit CLI if NodeJS is missing
• Show error message for invalid credentials file
• Fix emDB crash for large peak tables

Others

• Add logging for CLI and PollyIntegration utility (#1143)
• Last selected database will only be considered for reloading in the next session
• Export peak minMz and maxMz in peak detailed CSV
• Save individual curated groups in autosaved emDB
• Remove "Method Summary" tab from "Peak Detection" dialog
• Remove "Match" dialog
• Update El-MAVEN website link in Help
• Update citation policy in README

v0.9.0-beta.1

Merge #1174 from ElucidataInc/fix_crash_reports

Fix crash reports

v0.9.0-beta

Update icons for buttons

v0.9.0-alpha

Merge #1165 from saifulbkhan/ftr_notify_zlib

[Ftr] Notify users about ability to load zlib compressed data

v0.8.1

Bug fix:

• Fix "blank dialogs" issue by downgrading Qt library to a more stable version.

Others:

• Add an entry to Windows registry storing values for the location of parent El-MAVEN directory and path containing executable binaries.

v0.8.0

Features

• Process zlib compressed samples (#42 )
• Option to filter untargeted groups with no fragmentation events (#1094 )

Enhancements

• Optimized AsLSS baseline algorithm to prevent slowdown with bigger sample sets (#924 #583)
• OBI-warp alignment is 3-4x faster for bigger sample sets (#1017 )
• Correctly read aligned data from MAVEN project files (.mzrollDB)
• Improve read/write speed for alignment data in project files (.emDB and .mzrollDB)
• Improvements in reading filterline for mzML files (filterstring from spectrumList and scan field) (#116 )
• Match Compound widget has more relevant information to facilitate correct identification (#1100 )

UI/UX

• Tabified the Align dialog
• OBI-warp is the default algorithm for Alignment
• Interaction between Spectra widget and Compound match widget is through clicks instead of hover (#888 )
• Disable action buttons while alignment is in progress (#993 )

Bug Fixes

• All fragmentation events for a precursor are displayed in the EIC
• Crashes in the 3rd party OBI-warp library have been fixed
• Crash on changing mass resolution type during Automated Feature Selection has been fixed
• Switching to PollyPhi through the Polly notification should not give a license error
• Polly will no longer trigger recurring error messages in case of weak or no internet connectivity
• Removed an unecessary breakpoint in untargeted peak detection
• Sort Peak table by maxAreaTop correctly (#1011 )
• Compounds with same ID but different name in the database should not result in a suffix attached to the compound name (#1082 )
• Fixed a crash in case of empty scans in MSMS data

Others

• Removed Loess Fit from Align dialog
• Removed the option to save .mzroll project files
• Removed debug statements while loading mzML files (#724 )
• CLI will write the Polly redirection URL in a separate temporary file
• Reduced compilation time by managing dependencies among the source files
• Updated installation instructions in README
• El-MAVEN can be compiled on MacOS using QtCreator
• Continuous integration on Windows, Mac, Linux with test coverage report
• Continuous deployment on Windows and Mac

v0.8.0-beta

Merge branch 'alpha_hotfixes' into develop