run.R doesn't run

[eeholmes]

1. It looks like I need to change, this line to TRUE to create the figures

https://github.com/RVerse-Tutorials/A_NMFSReport/blob/main/code/run.R#L45

3. But when I do that it says dir_out_ref does not exist. The other dirs_out's are defined in my environment but not that one.

https://github.com/RVerse-Tutorials/A_NMFSReport/blob/main/code/run.R#L49

[eeholmes]

You can test here:

https://rstudio.cloud/content/4288524

Ran this code

https://emilymarkowitz-noaa.github.io/NMFSReports/articles/A_use-buildReport.html

so just run

source("./code/run.R")

to see the problem. In this case it is problem #1, the data files are not created