From d25aa96273c883ad17da33beee1f571edf67d5eb Mon Sep 17 00:00:00 2001 From: dramanica Date: Fri, 8 Dec 2023 04:45:59 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20EvolEcol?= =?UTF-8?q?Group/geograph@b5865393d52070ee2b1a78e8dff689d032d1cd66=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- dev/articles/geograph.html | 2 +- dev/index.html | 2 +- dev/pkgdown.yml | 2 +- dev/reference/auxiliary.html | 4 ---- dev/reference/buffer.html | 4 ---- dev/reference/closestNode.html | 4 ---- dev/reference/combineCosts.html | 6 +++--- dev/reference/connectivity-2.png | Bin 138998 -> 140104 bytes dev/reference/connectivity.html | 4 ---- dev/reference/dijkstra-methods.html | 4 ---- dev/reference/dropDeadEdges.html | 4 ---- dev/reference/extractFromLayer.html | 4 ---- dev/reference/findLand-1.png | Bin 116055 -> 117493 bytes dev/reference/findLand.html | 20 ++++++++------------ dev/reference/gData-class.html | 4 ---- dev/reference/gGraph-class.html | 4 ---- dev/reference/geo.add.edges.html | 4 ---- dev/reference/geo.change.attr.html | 4 ---- dev/reference/getColors.html | 4 ---- dev/reference/getCosts.html | 4 ---- dev/reference/getEdges.html | 4 ---- dev/reference/getNodesAttr.html | 4 ---- dev/reference/isInArea.html | 4 ---- dev/reference/makeGrid.html | 4 ---- dev/reference/plot-gData.html | 4 ---- dev/reference/plot-gGraph.html | 4 ---- dev/reference/setCosts.html | 5 ----- dev/reference/setDistCosts.html | 4 ---- dev/reference/setEdges.html | 4 ---- dev/search.json | 2 +- 30 files changed, 15 insertions(+), 108 deletions(-) diff --git a/dev/articles/geograph.html b/dev/articles/geograph.html index 507fe1f..cfd271d 100644 --- a/dev/articles/geograph.html +++ b/dev/articles/geograph.html @@ -76,7 +76,7 @@

Thibaut Jombart and Andrea Manica

-

2023-12-07

+

2023-12-08

Source: vignettes/geograph.Rmd
geograph.Rmd
diff --git a/dev/index.html b/dev/index.html index 6a1bd42..bc86278 100644 --- a/dev/index.html +++ b/dev/index.html @@ -81,7 +81,7 @@

InstallationGitHub with:

 install.packages("devtools")
-devtools::install_github("thibautjombart/geoGraph")
+devtools::install_github("EvolEcolGroup/geograph/")

How the package works diff --git a/dev/pkgdown.yml b/dev/pkgdown.yml index 87ab46d..779f957 100644 --- a/dev/pkgdown.yml +++ b/dev/pkgdown.yml @@ -3,7 +3,7 @@ pkgdown: 2.0.7 pkgdown_sha: ~ articles: geograph: geograph.html -last_built: 2023-12-07T21:07Z +last_built: 2023-12-08T04:44Z urls: reference: https://evolecolgroup.github.io/geograph/reference article: https://evolecolgroup.github.io/geograph/articles diff --git a/dev/reference/auxiliary.html b/dev/reference/auxiliary.html index ec48f0d..166df22 100644 --- a/dev/reference/auxiliary.html +++ b/dev/reference/auxiliary.html @@ -130,10 +130,6 @@

Details

  • rebuild: in development.

    • -
    -

    Author

    -

    Thibaut Jombart (t.jombart@imperial.ac.uk)

    -

    Examples

    diff --git a/dev/reference/buffer.html b/dev/reference/buffer.html index 292f20c..74fe1fe 100644 --- a/dev/reference/buffer.html +++ b/dev/reference/buffer.html @@ -115,10 +115,6 @@

    Details

    -
    -

    Author

    -

    Thibaut Jombart (t.jombart@imperial.ac.uk)

    -

    Examples

    diff --git a/dev/reference/closestNode.html b/dev/reference/closestNode.html index 6f1f7b6..17f2c12 100644 --- a/dev/reference/closestNode.html +++ b/dev/reference/closestNode.html @@ -149,10 +149,6 @@

    See also

    geo.add.edges and geo.remove.edges to interactively add or remove edges in a gGraph object.

    -
    -

    Author

    -

    Thibaut Jombart (t.jombart@imperial.ac.uk)

    -

    Examples

    diff --git a/dev/reference/combineCosts.html b/dev/reference/combineCosts.html index 7b80cd6..af465a8 100644 --- a/dev/reference/combineCosts.html +++ b/dev/reference/combineCosts.html @@ -115,10 +115,10 @@

    Examples
    data("worldgraph.40k")
 # new graph with custom cost function
 exp.cost <- function(x1, x2, cost.coeff) {
- exp(-abs(x1 - x2) * cost.coeff)
+  exp(-abs(x1 - x2) * cost.coeff)
 }
 # create a set of node costs
-worldgraph.40k@nodes.attr$meanProd<-runif(n=40962)
+worldgraph.40k@nodes.attr$meanProd <- runif(n = 40962)
 new_costs_graph <-
   setCosts(
     worldgraph.40k,
@@ -128,7 +128,7 @@ 
    Examples    cost.coeff = 0.5
   )
 # combine costs from the original graph with the new costs
-combine_costs_graph<- combineCosts(worldgraph.40k, new_costs_graph, method="sum")
+combine_costs_graph <- combineCosts(worldgraph.40k, new_costs_graph, method = "sum")