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remove unnecessary 'data' argument
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eviecarter33 committed Jan 16, 2025
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Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion vignettes/a03_example_clustering_and_dapc.Rmd
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Expand Up @@ -422,7 +422,7 @@ anole_snmf <- gt_admix_reorder_q(anole_snmf, group = anole_gt$forest)
And replot the data:

```{r, fig.alt = "Barplot of individuals coloured by predicted ancestry proportion (Q) from each of K ancestral sources, labelled Atlantic forest or Amazonian forest"}
autoplot(anole_snmf, type = "barplot", k = 3, run = 1, data = anole_gt, annotate_group = TRUE, arrange_by_group = TRUE, arrange_by_indiv = TRUE, reorder_within_groups = TRUE)
autoplot(anole_snmf, type = "barplot", k = 3, run = 1, annotate_group = TRUE, arrange_by_group = TRUE, arrange_by_indiv = TRUE, reorder_within_groups = TRUE)
```

And here we can see that the Atlantic Forest individuals clearly separate from
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