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Fix deprecations in ExaFEL #7

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4 tasks
phyy-nx opened this issue Aug 30, 2019 · 0 comments
Open
4 tasks

Fix deprecations in ExaFEL #7

phyy-nx opened this issue Aug 30, 2019 · 0 comments

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@phyy-nx
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phyy-nx commented Aug 30, 2019

TODO (lifted from dials/dials#885)

  • Replace dials.util.halraiser with dials.util.show_mail_on_error context manager;
  • Replace dxtbx.model.experiment_list.ExperimentListDumper and dxtbx.serialize.dump with as_file method of experiment list
  • Replace dials.algorithms.indexing.index_reflections with dials.algorithms.indexing.assign_indices.AssignIndicesGlobal (not in xfel but could be in extant repositories)
  • Fix DeprecationWarning: Setting verbosity for a Refiner is deprecated. See retire PHIL parameter verbosity= dials/dials#860
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