From 11387cc915ca2d924cda694dc23d743f9dfdcdd8 Mon Sep 17 00:00:00 2001 From: domna Date: Fri, 7 Jun 2024 09:08:25 +0200 Subject: [PATCH] Bump pynx to >= 0.3.2 --- dev-requirements.txt | 461 ++----------------------------------------- pyproject.toml | 2 +- 2 files changed, 18 insertions(+), 445 deletions(-) diff --git a/dev-requirements.txt b/dev-requirements.txt index 48ce72e..4657755 100644 --- a/dev-requirements.txt +++ b/dev-requirements.txt @@ -4,367 +4,74 @@ # # pip-compile --extra=dev --output-file=dev-requirements.txt pyproject.toml # -appnope==0.1.4 - # via ipykernel -asciitree==0.3.3 - # via zarr +anytree==2.12.1 + # via pynxtools ase==3.22.1 - # via - # ifes-apt-tc-data-modeling - # pynxtools -asteval==0.9.31 - # via lmfit -asttokens==2.4.1 - # via stack-data -attrs==23.2.0 - # via - # cattrs - # requests-cache -blosc2==2.5.1 - # via tables + # via pynxtools build==1.0.3 # via pip-tools -cattrs==23.2.3 - # via requests-cache -certifi==2024.2.2 - # via requests -charset-normalizer==3.3.2 - # via requests click==8.1.7 # via - # dask + # click-default-group # pip-tools # pynxtools -cloudpickle==3.0.0 - # via dask -comm==0.2.1 - # via ipykernel +click-default-group==1.2.4 + # via pynxtools contourpy==1.2.0 # via matplotlib cycler==0.12.1 # via matplotlib -dask[array]==2024.2.0 - # via - # hyperspy - # kikuchipy - # orix - # pyxem -debugpy==1.8.1 - # via ipykernel -decorator==5.1.1 - # via - # ipyparallel - # ipython -diffpy-structure==3.1.0 - # via - # diffsims - # kikuchipy - # orix -diffsims==0.5.2 - # via - # kikuchipy - # pyxem -dill==0.3.8 - # via hyperspy -entrypoints==0.4 - # via ipyparallel exceptiongroup==1.2.0 - # via - # cattrs - # ipython - # pytest -executing==2.0.1 - # via stack-data -fabio==2023.10.0 - # via - # pyfai - # silx -fasteners==0.19 - # via zarr -flatdict==4.0.1 - # via pynxtools + # via pytest fonttools==4.49.0 # via matplotlib -fsspec==2024.2.0 - # via - # dask - # hyperspy -future==0.18.3 - # via uncertainties -gitdb==4.0.11 - # via gitpython -gitpython==3.1.42 - # via pynxtools h5py==3.10.0 # via - # fabio - # hdf5plugin - # hyperspy - # ifes-apt-tc-data-modeling - # kikuchipy - # nionswift - # orix - # pyfai # pynxtools # pynxtools-mpes (pyproject.toml) - # pyxem - # silx -hdf5plugin==4.4.0 - # via fabio -hyperspy==1.7.6 - # via - # kikuchipy - # pynxtools - # pyxem -idna==3.6 - # via requests -ifes-apt-tc-data-modeling==0.1 - # via pynxtools -imageio==2.27.0 - # via - # hyperspy - # kikuchipy - # nionswift - # nionswift-io - # nionui - # scikit-image importlib-metadata==7.0.1 - # via - # dask - # hyperspy - # pynxtools + # via pynxtools iniconfig==2.0.0 # via pytest -ipykernel==6.29.2 - # via ipyparallel -ipyparallel==8.6.1 - # via hyperspy -ipython==8.21.0 - # via - # hyperspy - # ipykernel - # ipyparallel -jedi==0.19.1 - # via ipython -jinja2==3.1.3 - # via hyperspy -joblib==1.3.2 - # via scikit-learn -jupyter-client==8.6.0 - # via - # ipykernel - # ipyparallel -jupyter-core==5.7.1 - # via - # ipykernel - # jupyter-client -kikuchipy==0.9.0 - # via pynxtools kiwisolver==1.4.5 # via matplotlib -lark==1.1.9 - # via pynxtools -lazy-loader==0.3 - # via scikit-image -llvmlite==0.42.0 - # via numba -lmfit==1.2.2 - # via pyxem -locket==1.0.0 - # via partd lxml==5.1.0 - # via fabio -markupsafe==2.1.5 - # via jinja2 + # via pynxtools matplotlib==3.8.3 - # via - # ase - # diffsims - # hyperspy - # kikuchipy - # matplotlib-scalebar - # orix - # pyfai - # pyxem - # radioactivedecay -matplotlib-inline==0.1.6 - # via - # ipykernel - # ipython -matplotlib-scalebar==0.8.1 - # via orix + # via ase mergedeep==1.3.4 # via pynxtools -mpmath==1.3.0 - # via sympy -msgpack==1.0.7 - # via blosc2 mypy==1.8.0 # via pynxtools-mpes (pyproject.toml) mypy-extensions==1.0.0 # via mypy -natsort==8.4.0 - # via hyperspy -ndindex==1.8 - # via blosc2 -nest-asyncio==1.6.0 - # via ipykernel -networkx==3.2.1 - # via - # radioactivedecay - # scikit-image -niondata==15.6.2 - # via - # nionswift - # nionswift-io -nionswift==16.10.0 - # via pynxtools -nionswift-io==15.2.1 - # via nionswift -nionui==7.0.3 - # via nionswift -nionutils==0.4.10 - # via - # niondata - # nionswift - # nionswift-io - # nionui -numba==0.59.0 - # via - # diffsims - # hyperspy - # kikuchipy - # orix - # pyxem - # sparse -numcodecs==0.12.1 - # via zarr -numexpr==2.9.0 - # via - # hyperspy - # pyfai - # pyxem - # tables numpy==1.26.4 # via # ase - # blosc2 # contourpy - # dask - # diffsims - # fabio # h5py - # hyperspy - # ifes-apt-tc-data-modeling - # imageio - # kikuchipy - # lmfit # matplotlib - # niondata - # nionswift - # nionswift-io - # nionui - # numba - # numcodecs - # numexpr - # numpy-quaternion - # orix # pandas - # pycifrw - # pyfai # pynxtools - # pyxem - # radioactivedecay - # scikit-image - # scikit-learn # scipy - # silx - # sparse - # tables - # tifffile # xarray - # zarr -numpy-quaternion==2023.0.2 - # via orix -orix==0.11.1 - # via - # diffsims - # kikuchipy - # pyxem packaging==23.2 # via # build - # dask - # hyperspy - # ipykernel # matplotlib - # pooch # pytest - # scikit-image - # silx - # tables # xarray pandas==2.2.0 # via - # ifes-apt-tc-data-modeling # pynxtools # xarray -parso==0.8.3 - # via jedi -partd==1.4.1 - # via dask -pexpect==4.9.0 - # via ipython pillow==10.0.1 - # via - # fabio - # hyperspy - # imageio - # matplotlib - # nionswift - # scikit-image -pint==0.23 - # via hyperspy + # via matplotlib pip-tools==7.4.0 # via pynxtools-mpes (pyproject.toml) -platformdirs==4.2.0 - # via - # jupyter-core - # pooch - # requests-cache pluggy==1.4.0 # via pytest -ply==3.11 - # via pycifrw -pooch==1.8.0 - # via - # kikuchipy - # orix -prettytable==3.10.0 - # via hyperspy -prompt-toolkit==3.0.43 - # via ipython -psutil==5.9.8 - # via - # diffsims - # ipykernel - # ipyparallel - # pyxem -ptyprocess==0.7.0 - # via pexpect -pure-eval==0.2.2 - # via stack-data -py-cpuinfo==9.0.0 - # via - # blosc2 - # tables -pycifrw==4.4.6 - # via diffpy-structure -pyfai==2024.2.0 - # via pyxem -pygments==2.17.2 - # via ipython -pynxtools==0.0.10 +pynxtools==0.3.2 # via pynxtools-mpes (pyproject.toml) pyparsing==3.1.1 # via matplotlib @@ -376,96 +83,22 @@ pytest==8.0.1 # via pynxtools-mpes (pyproject.toml) python-dateutil==2.8.2 # via - # hyperspy - # ipyparallel - # jupyter-client # matplotlib # pandas pytz==2024.1 - # via - # nionswift - # pandas - # pynxtools -pytz-deprecation-shim==0.1.0.post0 - # via tzlocal -pyxem==0.16.0 - # via pynxtools + # via pandas pyyaml==6.0.1 # via - # dask - # hyperspy - # kikuchipy # pynxtools # pynxtools-mpes (pyproject.toml) -pyzmq==25.1.2 - # via - # ipykernel - # ipyparallel - # jupyter-client -radioactivedecay==0.4.22 - # via ifes-apt-tc-data-modeling -requests==2.31.0 - # via - # hyperspy - # pooch - # pynxtools - # requests-cache -requests-cache==1.2.0 - # via pynxtools ruff==0.3.4 # via pynxtools-mpes (pyproject.toml) -scikit-image==0.22.0 - # via - # hyperspy - # kikuchipy - # pyxem -scikit-learn==1.4.1.post1 - # via - # kikuchipy - # pyxem scipy==1.12.0 - # via - # ase - # diffsims - # hyperspy - # kikuchipy - # lmfit - # niondata - # nionswift - # orix - # pyfai - # pynxtools - # pyxem - # radioactivedecay - # scikit-image - # scikit-learn - # sparse -silx==2.0.0 - # via pyfai + # via ase six==1.16.0 # via - # asttokens - # diffpy-structure + # anytree # python-dateutil - # url-normalize -smmap==5.0.1 - # via gitdb -sparse==0.15.1 - # via hyperspy -stack-data==0.6.3 - # via ipython -sympy==1.12 - # via - # hyperspy - # radioactivedecay -tables==3.9.2 - # via ifes-apt-tc-data-modeling -threadpoolctl==3.3.0 - # via scikit-learn -tifffile==2024.2.12 - # via - # hyperspy - # scikit-image tomli==2.0.1 # via # build @@ -473,78 +106,18 @@ tomli==2.0.1 # pip-tools # pyproject-hooks # pytest -toolz==0.12.1 - # via - # dask - # hyperspy - # partd -tornado==6.4 - # via - # ipykernel - # ipyparallel - # jupyter-client -tqdm==4.66.2 - # via - # diffsims - # hyperspy - # ipyparallel - # kikuchipy - # orix - # pyxem -traitlets==5.14.1 - # via - # comm - # ipykernel - # ipyparallel - # ipython - # jupyter-client - # jupyter-core - # matplotlib-inline -traits==6.4.3 - # via - # hyperspy - # pyxem -transforms3d==0.4.1 - # via - # diffsims - # pyxem types-pyyaml==6.0.12.12 # via pynxtools-mpes (pyproject.toml) typing-extensions==4.9.0 - # via - # cattrs - # mypy - # pint + # via mypy tzdata==2024.1 - # via - # pandas - # pytz-deprecation-shim -tzlocal==4.3 - # via - # nionswift - # pynxtools -uncertainties==3.1.7 - # via lmfit -url-normalize==1.4.3 - # via requests-cache -urllib3==2.2.1 - # via - # requests - # requests-cache -wcwidth==0.2.13 - # via - # prettytable - # prompt-toolkit + # via pandas wheel==0.42.0 # via pip-tools xarray==2024.2.0 # via # pynxtools # pynxtools-mpes (pyproject.toml) -zarr==2.17.0 - # via hyperspy -zipfile37==0.1.3 - # via pynxtools zipp==3.17.0 # via importlib-metadata diff --git a/pyproject.toml b/pyproject.toml index 8768e62..92abebf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ dependencies = [ "h5py>=3.6.0", "PyYAML>=6.0", "xarray>=0.20.2", - "pynxtools>=0.0.10" + "pynxtools>=0.3.2" ] [project.urls]