From 54b44f93ab3f033cf4af6508f5f6f76d21aed13d Mon Sep 17 00:00:00 2001
From: FBartos <f.bartos96@gmail.com>
Date: Thu, 3 Mar 2022 10:36:20 +0100
Subject: [PATCH] update github actions

---
 .github/workflows/pkgdown.yaml       | 17 ++++++++++++-
 .github/workflows/test-coverage.yaml | 38 ++++++++++++++++++----------
 2 files changed, 40 insertions(+), 15 deletions(-)

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
index 1b8f3fb3..a90d2a44 100644
--- a/.github/workflows/pkgdown.yaml
+++ b/.github/workflows/pkgdown.yaml
@@ -27,9 +27,16 @@ jobs:
       - uses: actions/checkout@v2
 
       - uses: r-lib/actions/setup-r@v1
+        with:
+          r-version: ${{ matrix.config.r }}
 
       - uses: r-lib/actions/setup-pandoc@v1
 
+      - name: Install harfbuzz freetype2 fribidi Headers
+        if: runner.os == 'Linux'
+        run: sudo apt-get install libharfbuzz-dev libfribidi-dev
+
+
       - name: Query dependencies
         run: |
           install.packages('remotes')
@@ -44,6 +51,14 @@ jobs:
           key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
           restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
+        run: |
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+
       - name: Install JAGS (windows-latest)
         if: runner.os == 'Windows'
         run: |
@@ -61,7 +76,7 @@ jobs:
       - name: Install dependencies
         run: |
           remotes::install_deps(dependencies = TRUE)
-          install.packages("pkgdown", type = "binary")
+          install.packages("pkgdown")
           remotes::install_version("BayesTools", "0.1.3")
         shell: Rscript {0}
 
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
index 0d823d5b..a8ba3254 100644
--- a/.github/workflows/test-coverage.yaml
+++ b/.github/workflows/test-coverage.yaml
@@ -31,23 +31,11 @@ jobs:
       - uses: actions/checkout@v2
 
       - uses: r-lib/actions/setup-r@v1
+        with:
+          r-version: ${{ matrix.config.r }}
 
       - uses: r-lib/actions/setup-pandoc@v1
 
-      - name: Install JAGS (windows-latest)
-        if: runner.os == 'Windows'
-        run: |
-          curl.exe -o wjags.exe --url https://deac-fra.dl.sourceforge.net/project/mcmc-jags/JAGS/4.x/Windows/JAGS-4.2.0-Rtools33.exe
-          wjags.exe /S
-          del wjags.exe
-        shell: cmd
-
-      - name: Install JAGS (macOS-latest)
-        if: runner.os == 'macOS'
-        run : |
-          rm '/usr/local/bin/gfortran'
-          brew install automake jags
-
       - name: Query dependencies
         run: |
           install.packages('remotes')
@@ -62,6 +50,28 @@ jobs:
           key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
           restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
+        run: |
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
+
+      - name: Install JAGS (windows-latest)
+        if: runner.os == 'Windows'
+        run: |
+          curl.exe -o wjags.exe --url https://deac-fra.dl.sourceforge.net/project/mcmc-jags/JAGS/4.x/Windows/JAGS-4.2.0-Rtools33.exe
+          wjags.exe /S
+          del wjags.exe
+        shell: cmd
+
+      - name: Install JAGS (macOS-latest)
+        if: runner.os == 'macOS'
+        run : |
+          rm '/usr/local/bin/gfortran'
+          brew install automake jags
+
       - name: Install dependencies
         run: |
           install.packages(c("remotes"))