diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index b5c0e189..92243965 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -28,7 +28,7 @@ jobs: - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", http-user-agent: "R/4.1.0 (ubuntu-20.04) R (4.1.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } # - {os: macOS-11.6.2, r: 'release'} # the release C++ version does not compile properly - + env: R_REMOTES_NO_ERRORS_FROM_WARNINGS: true RSPM: ${{ matrix.config.rspm }} @@ -83,7 +83,7 @@ jobs: run: | remotes::install_deps(dependencies = TRUE) remotes::install_cran("rcmdcheck") - remotes::install_version("BayesTools", "0.1.3") + remotes::install_version("BayesTools", "0.2.3") shell: Rscript {0} - name: Check diff --git a/.github/workflows/R-CMD-tests.yaml b/.github/workflows/R-CMD-tests.yaml index 0ba5ce22..6ea17164 100644 --- a/.github/workflows/R-CMD-tests.yaml +++ b/.github/workflows/R-CMD-tests.yaml @@ -104,7 +104,7 @@ jobs: run: | remotes::install_deps(dependencies = TRUE) remotes::install_cran("rcmdcheck") - remotes::install_version("BayesTools", "0.1.3") + remotes::install_version("BayesTools", "0.2.3") install.packages("devtools") install.packages("testthat") install.packages("vdiffr") diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index a90d2a44..e218b03b 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -77,7 +77,7 @@ jobs: run: | remotes::install_deps(dependencies = TRUE) install.packages("pkgdown") - remotes::install_version("BayesTools", "0.1.3") + remotes::install_version("BayesTools", "0.2.3") shell: Rscript {0} - name: Install package diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index a8ba3254..1a3cc7e1 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -26,7 +26,7 @@ jobs: env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - + steps: - uses: actions/checkout@v2 @@ -77,7 +77,7 @@ jobs: install.packages(c("remotes")) remotes::install_deps(dependencies = TRUE) remotes::install_cran("covr") - remotes::install_version("BayesTools", "0.1.3") + remotes::install_version("BayesTools", "0.2.3") shell: Rscript {0} - name: Test coverage diff --git a/DESCRIPTION b/DESCRIPTION index b2705ff5..fa6215f1 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: RoBMA Title: Robust Bayesian Meta-Analyses -Version: 2.2.0 +Version: 2.2.1 Maintainer: František Bartoš Authors@R: c( person("František", "Bartoš", role = c("aut", "cre"), diff --git a/NEWS.md b/NEWS.md index 10c3f2df..afd4303a 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,8 @@ +## version 2.2.1 +### Changes +- message about the effect size scale of parameter estimates is always shown +- compatibility with BayesTools 0.2.0+ + ## version 2.2 ### Features - three-level meta-analysis by specifying `study_ids` argument in `RoBMA`. However, note that this is (1) an experimental feature and (2) the computational expense of fitting selection models with clustering is extreme. As of now, it is almost impossible to have more than 2-3 estimates clustered within a single study). diff --git a/R/fit-and-marglik.R b/R/fit-and-marglik.R index e22fd9cf..40fcb448 100644 --- a/R/fit-and-marglik.R +++ b/R/fit-and-marglik.R @@ -124,20 +124,21 @@ }else{ - fit_data <- .fit_data(object[["data"]], priors, add_info[["effect_direction"]], add_info[["prior_scale"]]) - converged <- TRUE - has_posterior <- FALSE - fit <- list() - class(fit) <- "null_model" - marglik <- list() - marglik$logml <- sum(stats::dnorm(fit_data[["y"]], priors$mu$parameters[["location"]], fit_data[["se"]], log = TRUE)) - class(marglik) <- "bridge" + fit_data <- .fit_data(object[["data"]], priors, add_info[["effect_direction"]], add_info[["prior_scale"]]) + converged <- TRUE + has_posterior <- FALSE + fit <- list() + attr(fit, "prior_list") <- priors + class(fit) <- "null_model" + marglik <- list() + marglik$logml <- sum(stats::dnorm(fit_data[["y"]], priors$mu$parameters[["location"]], fit_data[["se"]], log = TRUE)) + class(marglik) <- "bridge" } # add model summaries if(has_posterior){ - fit_summary <- BayesTools::runjags_estimates_table(fit = fit, prior_list = priors, warnings = warnings) + fit_summary <- BayesTools::runjags_estimates_table(fit = fit, warnings = warnings) if(add_info[["prior_scale"]] != "y"){ fit_summaries <- .runjags_summary_list(fit, priors, add_info[["prior_scale"]], warnings) }else{ @@ -602,7 +603,6 @@ summary_list[[measure]] <- BayesTools::runjags_estimates_table( fit = fit, - prior_list = priors, transformations = transformations, warnings = warnings, footnotes = .scale_note(priors_scale, measure), diff --git a/R/transformations.R b/R/transformations.R index 29ba3858..3567c085 100644 --- a/R/transformations.R +++ b/R/transformations.R @@ -947,11 +947,10 @@ scale_logOR2d <- function(logOR) .scale_logOR2d$fun(logOR) } .scale_note <- function(prior_scale, output_scale){ - if(prior_scale == output_scale){ - return(NULL) - }else{ - return(paste0("The estimates are summarized on the ", .transformation_names(output_scale)," scale (priors were specified on the ", .transformation_names(prior_scale), " scale).")) - } + return(sprintf( + "The estimates are summarized on the %1$s scale (priors were specified on the %2$s scale).", + .transformation_names(output_scale), + .transformation_names(prior_scale))) } diff --git a/R/utilities.R b/R/utilities.R index ce17d66e..b57f7ce7 100644 --- a/R/utilities.R +++ b/R/utilities.R @@ -76,23 +76,17 @@ assign("max_cores", parallel::detectCores(logical = TRUE) - 1, envir = Ro return(invisible(FALSE)) } - BayesTools_min <- switch( + BayesTools_required <- switch( paste0(RoBMA.version, collapse = "."), - "2.1.1" = "0.1.3", - "2.1.2" = "0.1.3", - "2.2.0" = "0.1.3", - stop("New RoBMA version needs to be defined in '.check_BayesTools' function!") - ) - BayesTools_max <- switch( - paste0(RoBMA.version, collapse = "."), - "2.1.1" = "0.1.3", - "2.1.2" = "0.1.3", - "2.2.0" = "0.1.3", + "2.1.1" = c("0.1.3", "0.1.3"), + "2.1.2" = c("0.1.3", "0.1.3"), + "2.2.0" = c("0.1.3", "0.1.3"), + "2.2.1" = c("0.2.3", "0.2.999"), stop("New RoBMA version needs to be defined in '.check_BayesTools' function!") ) - min_OK <- all(as.integer(strsplit(BayesTools_min, ".", fixed = TRUE)[[1]]) <= unlist(BayesTools.version)) - max_OK <- all(as.integer(strsplit(BayesTools_max, ".", fixed = TRUE)[[1]]) >= unlist(BayesTools.version)) + min_OK <- all(as.integer(strsplit(BayesTools_required[1], ".", fixed = TRUE)[[1]]) <= unlist(BayesTools.version)) + max_OK <- all(as.integer(strsplit(BayesTools_required[2], ".", fixed = TRUE)[[1]]) >= unlist(BayesTools.version)) if(min_OK && max_OK){ return(invisible(TRUE)) @@ -100,9 +94,9 @@ assign("max_cores", parallel::detectCores(logical = TRUE) - 1, envir = Ro warning(sprintf( "RoBMA version %1$s requires BayesTools version higher or equal %2$s and lower or equal %3$s.", paste0(RoBMA.version, collapse = "."), - BayesTools_min, - BayesTools_max - ), call.=FALSE) + BayesTools_required[1], + BayesTools_required[2] + ), call.= FALSE) return(invisible(FALSE)) } } diff --git a/man/prior_informed.Rd b/man/prior_informed.Rd index 70d832e4..96e1d80e 100644 --- a/man/prior_informed.Rd +++ b/man/prior_informed.Rd @@ -18,7 +18,7 @@ of meta-analytic effect size estimates based on standardized mean differences social psychology based on prior elicitation with dr. Oosterwijk (Gronau et al. 2017).} } -For medicine, the possible options are based on BartoÅ¡ et al. (2021) +For medicine, the possible options are based on BartoÅ¡ et al. (2021) who developed empirical prior distributions for the effect size and heterogeneity parameters of the continuous standardized outcomes based on the Cochrane database of systematic reviews. Use \code{"Cochrane"} for a prior distribution based on the whole database or call diff --git a/tests/results/fits/fit_1.RDS b/tests/results/fits/fit_1.RDS index bf141044..50ab355e 100644 Binary files a/tests/results/fits/fit_1.RDS and b/tests/results/fits/fit_1.RDS differ diff --git a/tests/results/fits/fit_10.RDS b/tests/results/fits/fit_10.RDS index 767a7672..4a15e171 100644 Binary files a/tests/results/fits/fit_10.RDS and b/tests/results/fits/fit_10.RDS differ diff --git a/tests/results/fits/fit_11.RDS b/tests/results/fits/fit_11.RDS index fb868500..fa3de4ed 100644 Binary files a/tests/results/fits/fit_11.RDS and b/tests/results/fits/fit_11.RDS differ diff --git a/tests/results/fits/fit_12.RDS b/tests/results/fits/fit_12.RDS index 973d4953..d7755251 100644 Binary files a/tests/results/fits/fit_12.RDS and b/tests/results/fits/fit_12.RDS differ diff --git a/tests/results/fits/fit_13.RDS b/tests/results/fits/fit_13.RDS index 0f52a7c9..9f70d65e 100644 Binary files a/tests/results/fits/fit_13.RDS and b/tests/results/fits/fit_13.RDS differ diff --git a/tests/results/fits/fit_2.RDS b/tests/results/fits/fit_2.RDS index 7908c6fb..ca39ec1b 100644 Binary files a/tests/results/fits/fit_2.RDS and b/tests/results/fits/fit_2.RDS differ diff --git a/tests/results/fits/fit_3.RDS b/tests/results/fits/fit_3.RDS index 3ebf0aa1..90c7d585 100644 Binary files a/tests/results/fits/fit_3.RDS and b/tests/results/fits/fit_3.RDS differ diff --git a/tests/results/fits/fit_4.RDS b/tests/results/fits/fit_4.RDS index 48dcaea0..a4e0242e 100644 Binary files a/tests/results/fits/fit_4.RDS and b/tests/results/fits/fit_4.RDS differ diff --git a/tests/results/fits/fit_5.RDS b/tests/results/fits/fit_5.RDS index 3017e1de..56e8ec35 100644 Binary files a/tests/results/fits/fit_5.RDS and b/tests/results/fits/fit_5.RDS differ diff --git a/tests/results/fits/fit_6.RDS b/tests/results/fits/fit_6.RDS index 3a9348e7..eda254a6 100644 Binary files a/tests/results/fits/fit_6.RDS and b/tests/results/fits/fit_6.RDS differ diff --git a/tests/results/fits/fit_7.RDS b/tests/results/fits/fit_7.RDS index 7b4b1989..ba90c0ec 100644 Binary files a/tests/results/fits/fit_7.RDS and b/tests/results/fits/fit_7.RDS differ diff --git a/tests/results/fits/fit_8.RDS b/tests/results/fits/fit_8.RDS index 51004f2c..3ffd0799 100644 Binary files a/tests/results/fits/fit_8.RDS and b/tests/results/fits/fit_8.RDS differ diff --git a/tests/results/fits/fit_9.RDS b/tests/results/fits/fit_9.RDS index 1381fd31..0fe2d218 100644 Binary files a/tests/results/fits/fit_9.RDS and b/tests/results/fits/fit_9.RDS differ diff --git a/tests/results/summary.individual/1.txt b/tests/results/summary.individual/1.txt index 6af0772f..4881a68e 100644 --- a/tests/results/summary.individual/1.txt +++ b/tests/results/summary.individual/1.txt @@ -11,6 +11,7 @@ "Parameter estimates:" "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat " "<0 rows> (or 0-length row.names)" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -23,6 +24,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.428 0.271 0.045 0.381 0.958 0.00414 0.015 4300 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 3 Parameter prior distributions" @@ -36,6 +38,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.631 0.237 0.158 0.656 0.983 0.00371 0.016 4094 1.000" "omega[0.1,1] 0.323 0.204 0.045 0.281 0.793 0.00297 0.015 4721 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 4 Parameter prior distributions" @@ -48,6 +51,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.421 0.271 0.044 0.372 0.957 0.00415 0.015 4248 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 5 Parameter prior distributions" @@ -61,6 +65,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.606 0.249 0.126 0.627 0.982 0.00410 0.016 3679 1.000" "omega[0.05,1] 0.271 0.203 0.028 0.216 0.776 0.00339 0.017 3576 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 6 Parameter prior distributions" @@ -74,6 +79,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.616 0.243 0.145 0.639 0.984 0.00377 0.016 4138 1.000" "omega[0.5,1] 0.210 0.192 0.005 0.150 0.710 0.00347 0.018 3065 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 7 Parameter prior distributions" @@ -88,6 +94,7 @@ "omega[0.025,0.05] 0.707 0.211 0.243 0.745 0.988 0.00343 0.016 3774 1.000" "omega[0.05,0.5] 0.446 0.216 0.090 0.429 0.877 0.00341 0.016 4026 1.002" "omega[0.5,1] 0.153 0.152 0.003 0.103 0.571 0.00326 0.021 2187 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 8 Parameter prior distributions" @@ -99,6 +106,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PET 0.899 0.485 0.091 0.859 1.945 0.00533 0.011 8257 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 9 Parameter prior distributions" @@ -110,6 +118,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PEESE 1.870 1.024 0.186 1.797 4.046 0.01077 0.011 9037 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 10 Parameter prior distributions" @@ -121,6 +130,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.296 0.271 0.044 0.219 0.987 0.00301 0.011 8101 1.004" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 11 Parameter prior distributions" @@ -134,6 +144,7 @@ "tau 0.227 0.195 0.039 0.173 0.731 0.00234 0.012 6897 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.478 0.271 0.061 0.453 0.969 0.00403 0.015 4515 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 12 Parameter prior distributions" @@ -148,6 +159,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.653 0.233 0.174 0.685 0.985 0.00369 0.016 4000 1.000" "omega[0.1,1] 0.368 0.217 0.054 0.336 0.845 0.00320 0.015 4615 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 13 Parameter prior distributions" @@ -161,6 +173,7 @@ "tau 0.245 0.213 0.039 0.185 0.788 0.00246 0.012 7507 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.462 0.270 0.055 0.428 0.962 0.00404 0.015 4475 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 14 Parameter prior distributions" @@ -175,6 +188,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.625 0.243 0.144 0.655 0.984 0.00397 0.016 3744 1.000" "omega[0.05,1] 0.306 0.208 0.035 0.259 0.793 0.00319 0.015 4251 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 15 Parameter prior distributions" @@ -189,6 +203,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.644 0.237 0.165 0.673 0.987 0.00379 0.016 3907 1.001" "omega[0.5,1] 0.222 0.200 0.006 0.160 0.742 0.00381 0.019 2749 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 16 Parameter prior distributions" @@ -204,6 +219,7 @@ "omega[0.025,0.05] 0.731 0.200 0.275 0.772 0.991 0.00324 0.016 3823 1.003" "omega[0.05,0.5] 0.478 0.217 0.109 0.467 0.894 0.00355 0.016 3721 1.001" "omega[0.5,1] 0.167 0.158 0.004 0.118 0.588 0.00295 0.019 2884 1.003" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 17 Parameter prior distributions" @@ -216,6 +232,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.221 0.232 0.037 0.157 0.765 0.00250 0.011 8658 1.000" "PET 0.852 0.520 0.069 0.787 2.004 0.00623 0.012 6972 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 18 Parameter prior distributions" @@ -228,6 +245,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.245 0.240 0.038 0.177 0.846 0.00259 0.011 8525 1.000" "PEESE 1.829 1.112 0.142 1.715 4.326 0.01282 0.012 7523 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 19 Parameter prior distributions" @@ -239,6 +257,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.479 0.221 0.040 0.479 0.918 0.00218 0.010 10339 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 20 Parameter prior distributions" @@ -252,6 +271,7 @@ "mu 0.405 0.224 -0.018 0.399 0.860 0.00250 0.011 8062 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.547 0.261 0.086 0.554 0.974 0.00369 0.014 5032 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 21 Parameter prior distributions" @@ -266,6 +286,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.687 0.221 0.206 0.725 0.989 0.00349 0.016 4028 1.000" "omega[0.1,1] 0.420 0.219 0.071 0.399 0.862 0.00308 0.014 5071 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 22 Parameter prior distributions" @@ -279,6 +300,7 @@ "mu 0.392 0.231 -0.057 0.393 0.843 0.00259 0.011 7914 1.001" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.581 0.258 0.097 0.600 0.981 0.00385 0.015 4482 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 23 Parameter prior distributions" @@ -293,6 +315,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.683 0.225 0.198 0.722 0.988 0.00359 0.016 3930 1.000" "omega[0.05,1] 0.401 0.224 0.054 0.377 0.865 0.00344 0.015 4258 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 24 Parameter prior distributions" @@ -307,6 +330,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,0.5] 0.690 0.221 0.211 0.726 0.989 0.00337 0.015 4289 1.000" "omega[0.5,1] 0.296 0.227 0.008 0.246 0.813 0.00387 0.017 3447 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 25 Parameter prior distributions" @@ -322,6 +346,7 @@ "omega[0.025,0.05] 0.748 0.191 0.299 0.789 0.991 0.00321 0.017 3557 1.000" "omega[0.05,0.5] 0.521 0.214 0.125 0.520 0.911 0.00352 0.016 3688 1.000" "omega[0.5,1] 0.227 0.188 0.006 0.178 0.687 0.00334 0.018 3182 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 26 Parameter prior distributions" @@ -334,6 +359,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.237 0.313 -0.458 0.260 0.784 0.00651 0.021 2307 1.000" "PET 0.679 0.601 0.023 0.511 2.233 0.01348 0.022 1990 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 27 Parameter prior distributions" @@ -346,6 +372,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.291 0.268 -0.260 0.301 0.787 0.00397 0.015 4555 1.000" "PEESE 1.268 1.019 0.049 1.036 3.819 0.01716 0.017 3522 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 28 Parameter prior distributions" @@ -358,6 +385,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.452 0.280 -0.110 0.457 0.982 0.00316 0.011 7807 1.000" "tau 0.211 0.232 0.037 0.146 0.765 0.00279 0.012 6929 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 29 Parameter prior distributions" @@ -372,6 +400,7 @@ "tau 0.190 0.179 0.036 0.139 0.627 0.00206 0.011 7577 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.565 0.259 0.099 0.574 0.978 0.00379 0.015 4684 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 30 Parameter prior distributions" @@ -387,6 +416,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,0.1] 0.703 0.213 0.235 0.740 0.989 0.00331 0.016 4150 1.000" "omega[0.1,1] 0.433 0.219 0.081 0.415 0.868 0.00317 0.014 4780 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 31 Parameter prior distributions" @@ -401,6 +431,7 @@ "tau 0.210 0.203 0.039 0.148 0.749 0.00244 0.012 6925 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.580 0.259 0.095 0.595 0.981 0.00382 0.015 4610 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 32 Parameter prior distributions" @@ -416,6 +447,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.679 0.223 0.195 0.712 0.988 0.00353 0.016 3978 1.001" "omega[0.05,1] 0.395 0.222 0.051 0.368 0.853 0.00331 0.015 4500 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 33 Parameter prior distributions" @@ -431,6 +463,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.697 0.219 0.218 0.738 0.989 0.00352 0.016 3886 1.002" "omega[0.5,1] 0.282 0.230 0.006 0.226 0.814 0.00433 0.019 2819 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 34 Parameter prior distributions" @@ -447,6 +480,7 @@ "omega[0.025,0.05] 0.746 0.194 0.295 0.788 0.991 0.00317 0.016 3731 1.000" "omega[0.05,0.5] 0.517 0.214 0.124 0.518 0.902 0.00341 0.016 3915 1.000" "omega[0.5,1] 0.211 0.183 0.005 0.159 0.664 0.00337 0.018 2954 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 35 Parameter prior distributions" @@ -460,6 +494,7 @@ "mu 0.181 0.377 -0.682 0.215 0.828 0.00714 0.019 2783 1.003" "tau 0.229 0.242 0.037 0.155 0.857 0.00292 0.012 6854 1.000" "PET 0.730 0.646 0.023 0.556 2.439 0.01383 0.021 2184 1.002" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 36 Parameter prior distributions" @@ -473,3 +508,4 @@ "mu 0.205 0.367 -0.617 0.235 0.845 0.00623 0.017 3482 1.001" "tau 0.260 0.303 0.039 0.170 0.981 0.00455 0.015 4430 1.001" "PEESE 1.554 1.324 0.050 1.233 4.823 0.02658 0.020 2480 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/10.txt b/tests/results/summary.individual/10.txt index bb1aba7a..747bc3d4 100644 --- a/tests/results/summary.individual/10.txt +++ b/tests/results/summary.individual/10.txt @@ -16,3 +16,4 @@ "tau 0.211 0.204 0.037 0.149 0.738 0.00249 0.012 6744 1.000" "omega[0,0.1] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.1,1] 0.500 0.000 0.500 0.500 0.500 NA NA NA NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/12.txt b/tests/results/summary.individual/12.txt index ebaa6577..c7b7d5f2 100644 --- a/tests/results/summary.individual/12.txt +++ b/tests/results/summary.individual/12.txt @@ -12,6 +12,7 @@ "Parameter estimates:" "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat " "<0 rows> (or 0-length row.names)" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -23,3 +24,4 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.483 0.206 0.087 0.484 0.888 0.00207 0.010 9837 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/13.txt b/tests/results/summary.individual/13.txt index b6df8541..76d7a53d 100644 --- a/tests/results/summary.individual/13.txt +++ b/tests/results/summary.individual/13.txt @@ -13,6 +13,7 @@ "Parameter estimates:" "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat " "<0 rows> (or 0-length row.names)" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -25,6 +26,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,1] 0.440 0.272 0.047 0.397 0.959 0.01159 0.043 551 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 3 Parameter prior distributions" @@ -38,6 +40,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,0.1] 0.634 0.241 0.166 0.675 0.980 0.01035 0.043 545 NA" "omega[0.1,1] 0.313 0.200 0.040 0.266 0.783 0.00725 0.036 757 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 4 Parameter prior distributions" @@ -50,6 +53,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,1] 0.435 0.276 0.054 0.392 0.963 0.01157 0.042 571 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 5 Parameter prior distributions" @@ -63,6 +67,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.025,0.05] 0.608 0.244 0.136 0.618 0.975 0.01039 0.043 551 NA" "omega[0.05,1] 0.268 0.197 0.027 0.219 0.715 0.00861 0.044 521 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 6 Parameter prior distributions" @@ -76,6 +81,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,0.5] 0.627 0.236 0.157 0.649 0.981 0.00979 0.041 582 NA" "omega[0.5,1] 0.208 0.192 0.006 0.149 0.684 0.00929 0.048 427 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 427 is lower than the set target (500)." "" " " @@ -91,6 +97,7 @@ "omega[0.025,0.05] 0.726 0.200 0.285 0.765 0.990 0.00932 0.047 460 NA" "omega[0.05,0.5] 0.456 0.216 0.090 0.437 0.872 0.00992 0.046 474 NA" "omega[0.5,1] 0.148 0.149 0.005 0.101 0.534 0.00737 0.050 408 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 408 is lower than the set target (500)." "" " " @@ -103,6 +110,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PET 0.881 0.471 0.114 0.850 1.955 0.01488 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 9 Parameter prior distributions" @@ -114,6 +122,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PEESE 1.811 1.015 0.198 1.748 4.017 0.03068 0.030 1094 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 10 Parameter prior distributions" @@ -126,6 +135,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.318 0.432 0.045 0.226 1.037 0.01366 0.032 1000 NA" "rho 0.513 0.293 0.034 0.518 0.978 0.00927 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 11 Parameter prior distributions" @@ -140,6 +150,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,1] 0.467 0.270 0.057 0.440 0.968 0.01192 0.044 513 NA" "rho 0.500 0.288 0.028 0.498 0.980 0.00910 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 12 Parameter prior distributions" @@ -155,6 +166,7 @@ "omega[0.05,0.1] 0.650 0.233 0.192 0.674 0.985 0.01099 0.047 451 NA" "omega[0.1,1] 0.363 0.213 0.049 0.330 0.827 0.01017 0.048 440 NA" "rho 0.500 0.293 0.018 0.494 0.981 0.00921 0.031 1010 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 440 is lower than the set target (500)." "" " " @@ -170,6 +182,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,1] 0.456 0.255 0.062 0.434 0.936 0.00997 0.039 657 NA" "rho 0.496 0.291 0.028 0.502 0.967 0.00919 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 14 Parameter prior distributions" @@ -185,6 +198,7 @@ "omega[0.025,0.05] 0.608 0.249 0.148 0.618 0.984 0.01135 0.046 482 NA" "omega[0.05,1] 0.307 0.200 0.043 0.263 0.783 0.00922 0.046 472 NA" "rho 0.504 0.289 0.029 0.504 0.982 0.00914 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 472 is lower than the set target (500)." "" " " @@ -201,6 +215,7 @@ "omega[0.05,0.5] 0.628 0.238 0.145 0.653 0.983 0.01200 0.051 392 NA" "omega[0.5,1] 0.210 0.195 0.005 0.152 0.727 0.01058 0.054 338 NA" "rho 0.503 0.290 0.025 0.503 0.972 0.00916 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 338 is lower than the set target (500)." "" " " @@ -218,6 +233,7 @@ "omega[0.05,0.5] 0.461 0.217 0.107 0.449 0.895 0.01116 0.051 378 NA" "omega[0.5,1] 0.155 0.144 0.004 0.116 0.536 0.00979 0.068 215 NA" "rho 0.493 0.290 0.034 0.483 0.979 0.00917 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 215 is lower than the set target (500)." "" " " @@ -232,6 +248,7 @@ "tau 0.234 0.216 0.042 0.167 0.810 0.00810 0.037 712 NA" "PET 0.856 0.507 0.065 0.784 1.954 0.01712 0.034 877 NA" "rho 0.496 0.289 0.028 0.493 0.973 0.00976 0.034 875 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 18 Parameter prior distributions" @@ -245,6 +262,7 @@ "tau 0.265 0.253 0.046 0.190 0.938 0.01033 0.041 602 NA" "PEESE 1.854 1.135 0.123 1.725 4.124 0.04209 0.037 727 NA" "rho 0.499 0.283 0.026 0.500 0.971 0.00896 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 19 Parameter prior distributions" @@ -256,6 +274,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.455 0.215 0.019 0.462 0.864 0.00749 0.035 824 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 20 Parameter prior distributions" @@ -269,6 +288,7 @@ "mu 0.403 0.218 -0.025 0.393 0.832 0.00950 0.044 526 NA" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,1] 0.529 0.265 0.071 0.525 0.972 0.01052 0.040 633 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 21 Parameter prior distributions" @@ -283,6 +303,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,0.1] 0.693 0.221 0.216 0.747 0.987 0.00970 0.044 520 NA" "omega[0.1,1] 0.405 0.217 0.068 0.383 0.844 0.00892 0.041 593 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 22 Parameter prior distributions" @@ -296,6 +317,7 @@ "mu 0.405 0.240 -0.059 0.399 0.880 0.00890 0.037 728 NA" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,1] 0.579 0.255 0.089 0.606 0.977 0.01040 0.041 603 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 23 Parameter prior distributions" @@ -310,6 +332,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.025,0.05] 0.665 0.230 0.189 0.688 0.987 0.01031 0.045 497 NA" "omega[0.05,1] 0.393 0.222 0.061 0.360 0.860 0.00928 0.042 575 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 497 is lower than the set target (500)." "" " " @@ -325,6 +348,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,0.5] 0.677 0.221 0.199 0.711 0.988 0.01187 0.054 348 NA" "omega[0.5,1] 0.286 0.220 0.010 0.237 0.799 0.01014 0.046 471 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 348 is lower than the set target (500)." "" " " @@ -341,6 +365,7 @@ "omega[0.025,0.05] 0.750 0.191 0.306 0.787 0.992 0.00876 0.046 473 NA" "omega[0.05,0.5] 0.516 0.215 0.125 0.512 0.912 0.01027 0.048 437 NA" "omega[0.5,1] 0.217 0.182 0.005 0.160 0.670 0.01165 0.064 243 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 243 is lower than the set target (500)." "" " " @@ -354,6 +379,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.242 0.280 -0.386 0.264 0.744 0.01362 0.049 424 NA" "PET 0.636 0.527 0.024 0.499 2.007 0.02942 0.056 321 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 321 is lower than the set target (500)." "" " " @@ -367,6 +393,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.303 0.265 -0.288 0.313 0.778 0.01106 0.042 573 NA" "PEESE 1.214 0.988 0.043 1.009 3.697 0.04477 0.045 487 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 487 is lower than the set target (500)." "" " " @@ -381,6 +408,7 @@ "mu 0.444 0.274 -0.135 0.465 0.920 0.01025 0.037 715 NA" "tau 0.205 0.198 0.035 0.144 0.701 0.00860 0.043 531 NA" "rho 0.490 0.292 0.033 0.482 0.968 0.00923 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 29 Parameter prior distributions" @@ -396,6 +424,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,1] 0.557 0.265 0.091 0.565 0.977 0.01124 0.042 556 NA" "rho 0.500 0.285 0.033 0.505 0.970 0.00861 0.030 1096 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 30 Parameter prior distributions" @@ -412,6 +441,7 @@ "omega[0.05,0.1] 0.707 0.208 0.258 0.743 0.993 0.00893 0.043 543 NA" "omega[0.1,1] 0.432 0.220 0.082 0.402 0.872 0.00941 0.043 544 NA" "rho 0.501 0.295 0.024 0.503 0.979 0.00835 0.028 1245 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 31 Parameter prior distributions" @@ -427,6 +457,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" "omega[0.05,1] 0.578 0.260 0.091 0.594 0.983 0.01294 0.050 404 NA" "rho 0.495 0.296 0.022 0.494 0.973 0.00935 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 404 is lower than the set target (500)." "" " " @@ -444,6 +475,7 @@ "omega[0.025,0.05] 0.673 0.231 0.175 0.721 0.986 0.01264 0.055 334 NA" "omega[0.05,1] 0.402 0.228 0.056 0.373 0.879 0.01290 0.057 313 NA" "rho 0.513 0.289 0.029 0.515 0.976 0.01000 0.035 834 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 313 is lower than the set target (500)." "" " " @@ -461,6 +493,7 @@ "omega[0.05,0.5] 0.696 0.217 0.216 0.736 0.987 0.01024 0.047 450 NA" "omega[0.5,1] 0.274 0.218 0.009 0.219 0.784 0.01099 0.050 394 NA" "rho 0.493 0.293 0.023 0.505 0.969 0.00925 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 394 is lower than the set target (500)." "" " " @@ -479,6 +512,7 @@ "omega[0.05,0.5] 0.528 0.205 0.142 0.524 0.894 0.00981 0.048 438 NA" "omega[0.5,1] 0.209 0.175 0.006 0.168 0.621 0.00973 0.055 325 NA" "rho 0.505 0.287 0.025 0.514 0.977 0.00908 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 325 is lower than the set target (500)." "" " " @@ -494,6 +528,7 @@ "tau 0.240 0.242 0.039 0.163 0.825 0.01022 0.042 561 NA" "PET 0.713 0.671 0.024 0.545 2.473 0.03946 0.059 290 NA" "rho 0.516 0.293 0.033 0.513 0.983 0.00973 0.033 910 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 290 is lower than the set target (500)." "" " " @@ -509,4 +544,5 @@ "tau 0.272 0.287 0.040 0.184 0.993 0.01617 0.056 314 NA" "PEESE 1.497 1.249 0.055 1.252 4.975 0.05806 0.046 463 NA" "rho 0.506 0.294 0.026 0.505 0.974 0.00931 0.032 1000 NA" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "ESS 314 is lower than the set target (500)." diff --git a/tests/results/summary.individual/2.txt b/tests/results/summary.individual/2.txt index d9d06a82..712af721 100644 --- a/tests/results/summary.individual/2.txt +++ b/tests/results/summary.individual/2.txt @@ -11,6 +11,7 @@ "Parameter estimates:" "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat " "<0 rows> (or 0-length row.names)" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -23,6 +24,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.428 0.271 0.045 0.381 0.958 0.00414 0.015 4300 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 3 Parameter prior distributions" @@ -36,6 +38,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.631 0.237 0.158 0.656 0.983 0.00371 0.016 4094 1.000" "omega[0.1,1] 0.323 0.204 0.045 0.281 0.793 0.00297 0.015 4721 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 4 Parameter prior distributions" @@ -47,6 +50,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.296 0.271 0.044 0.219 0.987 0.00301 0.011 8101 1.004" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 5 Parameter prior distributions" @@ -60,6 +64,7 @@ "tau 0.227 0.195 0.039 0.173 0.731 0.00234 0.012 6897 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.478 0.271 0.061 0.453 0.969 0.00403 0.015 4515 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 6 Parameter prior distributions" @@ -74,6 +79,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.653 0.233 0.174 0.685 0.985 0.00369 0.016 4000 1.000" "omega[0.1,1] 0.368 0.217 0.054 0.336 0.845 0.00320 0.015 4615 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 7 Parameter prior distributions" @@ -85,6 +91,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.479 0.221 0.040 0.479 0.918 0.00218 0.010 10339 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 8 Parameter prior distributions" @@ -98,6 +105,7 @@ "mu 0.405 0.224 -0.018 0.399 0.860 0.00250 0.011 8062 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.547 0.261 0.086 0.554 0.974 0.00369 0.014 5032 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 9 Parameter prior distributions" @@ -112,6 +120,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.687 0.221 0.206 0.725 0.989 0.00349 0.016 4028 1.000" "omega[0.1,1] 0.420 0.219 0.071 0.399 0.862 0.00308 0.014 5071 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 10 Parameter prior distributions" @@ -124,6 +133,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.452 0.280 -0.110 0.457 0.982 0.00316 0.011 7807 1.000" "tau 0.211 0.232 0.037 0.146 0.765 0.00279 0.012 6929 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 11 Parameter prior distributions" @@ -138,6 +148,7 @@ "tau 0.190 0.179 0.036 0.139 0.627 0.00206 0.011 7577 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.565 0.259 0.099 0.574 0.978 0.00379 0.015 4684 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 12 Parameter prior distributions" @@ -153,3 +164,4 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,0.1] 0.703 0.213 0.235 0.740 0.989 0.00331 0.016 4150 1.000" "omega[0.1,1] 0.433 0.219 0.081 0.415 0.868 0.00317 0.014 4780 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/3.txt b/tests/results/summary.individual/3.txt index f5ff25a4..b10a2efa 100644 --- a/tests/results/summary.individual/3.txt +++ b/tests/results/summary.individual/3.txt @@ -11,6 +11,7 @@ "Parameter estimates:" "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat " "<0 rows> (or 0-length row.names)" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -22,6 +23,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PET 0.899 0.485 0.091 0.859 1.945 0.00533 0.011 8257 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 3 Parameter prior distributions" @@ -33,6 +35,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PEESE 1.870 1.024 0.186 1.797 4.046 0.01077 0.011 9037 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 4 Parameter prior distributions" @@ -44,6 +47,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.296 0.271 0.044 0.219 0.987 0.00301 0.011 8101 1.004" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 5 Parameter prior distributions" @@ -56,6 +60,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.221 0.232 0.037 0.157 0.765 0.00250 0.011 8658 1.000" "PET 0.852 0.520 0.069 0.787 2.004 0.00623 0.012 6972 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 6 Parameter prior distributions" @@ -68,6 +73,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.245 0.240 0.038 0.177 0.846 0.00259 0.011 8525 1.000" "PEESE 1.829 1.112 0.142 1.715 4.326 0.01282 0.012 7523 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 7 Parameter prior distributions" @@ -79,6 +85,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.479 0.221 0.040 0.479 0.918 0.00218 0.010 10339 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 8 Parameter prior distributions" @@ -91,6 +98,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.237 0.313 -0.458 0.260 0.784 0.00651 0.021 2307 1.000" "PET 0.679 0.601 0.023 0.511 2.233 0.01348 0.022 1990 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 9 Parameter prior distributions" @@ -103,6 +111,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.291 0.268 -0.260 0.301 0.787 0.00397 0.015 4555 1.000" "PEESE 1.268 1.019 0.049 1.036 3.819 0.01716 0.017 3522 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 10 Parameter prior distributions" @@ -115,6 +124,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.452 0.280 -0.110 0.457 0.982 0.00316 0.011 7807 1.000" "tau 0.211 0.232 0.037 0.146 0.765 0.00279 0.012 6929 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 11 Parameter prior distributions" @@ -128,6 +138,7 @@ "mu 0.181 0.377 -0.682 0.215 0.828 0.00714 0.019 2783 1.003" "tau 0.229 0.242 0.037 0.155 0.857 0.00292 0.012 6854 1.000" "PET 0.730 0.646 0.023 0.556 2.439 0.01383 0.021 2184 1.002" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 12 Parameter prior distributions" @@ -141,3 +152,4 @@ "mu 0.205 0.367 -0.617 0.235 0.845 0.00623 0.017 3482 1.001" "tau 0.260 0.303 0.039 0.170 0.981 0.00455 0.015 4430 1.001" "PEESE 1.554 1.324 0.050 1.233 4.823 0.02658 0.020 2480 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/4.txt b/tests/results/summary.individual/4.txt index 7175cf7d..89d61ea5 100644 --- a/tests/results/summary.individual/4.txt +++ b/tests/results/summary.individual/4.txt @@ -11,6 +11,7 @@ "Parameter estimates:" "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat " "<0 rows> (or 0-length row.names)" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -23,6 +24,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.403 0.270 0.038 0.351 0.951 0.00442 0.016 3729 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 3 Parameter prior distributions" @@ -36,6 +38,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,0.1] 0.624 0.243 0.144 0.649 0.982 0.00384 0.016 3983 1.000" "omega[0.1,1] 0.314 0.209 0.039 0.270 0.800 0.00331 0.016 3975 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 4 Parameter prior distributions" @@ -48,6 +51,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,1] 0.412 0.274 0.039 0.356 0.959 0.00457 0.017 3593 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 5 Parameter prior distributions" @@ -61,6 +65,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.605 0.251 0.121 0.627 0.982 0.00421 0.017 3555 1.000" "omega[0.05,1] 0.261 0.202 0.023 0.205 0.758 0.00361 0.018 3126 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 6 Parameter prior distributions" @@ -74,6 +79,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.609 0.247 0.135 0.628 0.983 0.00404 0.016 3718 1.000" "omega[0.5,1] 0.206 0.192 0.005 0.145 0.711 0.00362 0.019 2808 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 7 Parameter prior distributions" @@ -88,6 +94,7 @@ "omega[0.025,0.05] 0.711 0.211 0.240 0.753 0.990 0.00348 0.016 3679 1.000" "omega[0.05,0.5] 0.440 0.220 0.086 0.421 0.881 0.00362 0.016 3680 1.000" "omega[0.5,1] 0.150 0.149 0.003 0.100 0.557 0.00287 0.019 2698 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 8 Parameter prior distributions" @@ -99,6 +106,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PET 0.899 0.485 0.091 0.859 1.945 0.00533 0.011 8257 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 9 Parameter prior distributions" @@ -110,6 +118,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PEESE 1.870 1.024 0.186 1.797 4.046 0.01077 0.011 9037 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 10 Parameter prior distributions" @@ -121,6 +130,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.296 0.271 0.044 0.219 0.987 0.00301 0.011 8101 1.004" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 11 Parameter prior distributions" @@ -134,6 +144,7 @@ "tau 0.226 0.194 0.039 0.172 0.717 0.00242 0.012 6403 1.002" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.460 0.270 0.056 0.424 0.963 0.00397 0.015 4630 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 12 Parameter prior distributions" @@ -148,6 +159,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.652 0.234 0.169 0.683 0.985 0.00380 0.016 3780 1.000" "omega[0.1,1] 0.351 0.212 0.050 0.314 0.828 0.00313 0.015 4612 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 13 Parameter prior distributions" @@ -161,6 +173,7 @@ "tau 0.243 0.215 0.041 0.184 0.796 0.00249 0.012 7504 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.454 0.271 0.051 0.418 0.963 0.00394 0.015 4749 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 14 Parameter prior distributions" @@ -175,6 +188,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.617 0.246 0.135 0.641 0.984 0.00385 0.016 4067 1.000" "omega[0.05,1] 0.290 0.206 0.031 0.240 0.788 0.00322 0.016 4103 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 15 Parameter prior distributions" @@ -189,6 +203,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.634 0.238 0.156 0.662 0.984 0.00380 0.016 3927 1.002" "omega[0.5,1] 0.216 0.196 0.005 0.155 0.728 0.00365 0.019 2878 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 16 Parameter prior distributions" @@ -204,6 +219,7 @@ "omega[0.025,0.05] 0.724 0.203 0.268 0.765 0.990 0.00353 0.017 3310 1.001" "omega[0.05,0.5] 0.470 0.220 0.096 0.459 0.898 0.00371 0.017 3509 1.000" "omega[0.5,1] 0.165 0.160 0.004 0.114 0.590 0.00319 0.020 2509 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 17 Parameter prior distributions" @@ -216,6 +232,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.221 0.232 0.037 0.157 0.765 0.00250 0.011 8658 1.000" "PET 0.852 0.520 0.069 0.787 2.004 0.00623 0.012 6972 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 18 Parameter prior distributions" @@ -228,6 +245,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.245 0.240 0.038 0.177 0.846 0.00259 0.011 8525 1.000" "PEESE 1.829 1.112 0.142 1.715 4.326 0.01282 0.012 7523 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 19 Parameter prior distributions" @@ -239,6 +257,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.479 0.221 0.040 0.479 0.918 0.00218 0.010 10339 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 20 Parameter prior distributions" @@ -252,6 +271,7 @@ "mu 0.405 0.222 -0.015 0.399 0.853 0.00252 0.011 7733 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.533 0.267 0.077 0.529 0.976 0.00398 0.015 4508 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 21 Parameter prior distributions" @@ -266,6 +286,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.680 0.224 0.201 0.715 0.987 0.00366 0.016 3745 1.000" "omega[0.1,1] 0.407 0.222 0.063 0.383 0.864 0.00339 0.015 4318 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 22 Parameter prior distributions" @@ -279,6 +300,7 @@ "mu 0.394 0.236 -0.061 0.393 0.863 0.00274 0.012 7422 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.568 0.259 0.088 0.584 0.977 0.00375 0.014 4771 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 23 Parameter prior distributions" @@ -293,6 +315,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.670 0.228 0.183 0.708 0.986 0.00366 0.016 3891 1.000" "omega[0.05,1] 0.389 0.225 0.048 0.361 0.856 0.00339 0.015 4388 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 24 Parameter prior distributions" @@ -307,6 +330,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.694 0.220 0.210 0.736 0.989 0.00351 0.016 3945 1.000" "omega[0.5,1] 0.302 0.232 0.008 0.251 0.825 0.00413 0.018 3147 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 25 Parameter prior distributions" @@ -322,6 +346,7 @@ "omega[0.025,0.05] 0.749 0.194 0.297 0.792 0.991 0.00320 0.016 3683 1.000" "omega[0.05,0.5] 0.518 0.214 0.123 0.519 0.905 0.00352 0.016 3702 1.000" "omega[0.5,1] 0.226 0.190 0.005 0.176 0.687 0.00339 0.018 3150 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 26 Parameter prior distributions" @@ -334,6 +359,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.237 0.313 -0.458 0.260 0.784 0.00651 0.021 2307 1.000" "PET 0.679 0.601 0.023 0.511 2.233 0.01348 0.022 1990 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 27 Parameter prior distributions" @@ -346,6 +372,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.291 0.268 -0.260 0.301 0.787 0.00397 0.015 4555 1.000" "PEESE 1.268 1.019 0.049 1.036 3.819 0.01716 0.017 3522 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 28 Parameter prior distributions" @@ -358,6 +385,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.452 0.280 -0.110 0.457 0.982 0.00316 0.011 7807 1.000" "tau 0.211 0.232 0.037 0.146 0.765 0.00279 0.012 6929 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 29 Parameter prior distributions" @@ -372,6 +400,7 @@ "tau 0.189 0.176 0.036 0.136 0.656 0.00219 0.012 6456 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,1] 0.550 0.262 0.088 0.556 0.975 0.00399 0.015 4310 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 30 Parameter prior distributions" @@ -387,6 +416,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.691 0.220 0.212 0.728 0.989 0.00352 0.016 3884 1.000" "omega[0.1,1] 0.418 0.220 0.070 0.397 0.869 0.00335 0.015 4300 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 31 Parameter prior distributions" @@ -401,6 +431,7 @@ "tau 0.206 0.199 0.038 0.147 0.728 0.00251 0.013 6306 1.002" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,1] 0.570 0.262 0.089 0.584 0.981 0.00386 0.015 4605 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 32 Parameter prior distributions" @@ -416,6 +447,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.025,0.05] 0.669 0.228 0.179 0.704 0.987 0.00379 0.017 3632 1.002" "omega[0.05,1] 0.383 0.223 0.047 0.354 0.850 0.00351 0.016 4022 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 33 Parameter prior distributions" @@ -431,6 +463,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.680 0.226 0.192 0.717 0.988 0.00361 0.016 3903 1.000" "omega[0.5,1] 0.277 0.227 0.007 0.220 0.808 0.00429 0.019 2792 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 34 Parameter prior distributions" @@ -447,6 +480,7 @@ "omega[0.025,0.05] 0.746 0.196 0.286 0.790 0.991 0.00332 0.017 3471 1.000" "omega[0.05,0.5] 0.511 0.216 0.119 0.511 0.904 0.00374 0.017 3337 1.000" "omega[0.5,1] 0.197 0.178 0.004 0.144 0.650 0.00341 0.019 2735 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 35 Parameter prior distributions" @@ -460,6 +494,7 @@ "mu 0.181 0.377 -0.682 0.215 0.828 0.00714 0.019 2783 1.003" "tau 0.229 0.242 0.037 0.155 0.857 0.00292 0.012 6854 1.000" "PET 0.730 0.646 0.023 0.556 2.439 0.01383 0.021 2184 1.002" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 36 Parameter prior distributions" @@ -473,3 +508,4 @@ "mu 0.205 0.367 -0.617 0.235 0.845 0.00623 0.017 3482 1.001" "tau 0.260 0.303 0.039 0.170 0.981 0.00455 0.015 4430 1.001" "PEESE 1.554 1.324 0.050 1.233 4.823 0.02658 0.020 2480 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/5.txt b/tests/results/summary.individual/5.txt index ad7eb291..d5f8da6a 100644 --- a/tests/results/summary.individual/5.txt +++ b/tests/results/summary.individual/5.txt @@ -12,6 +12,7 @@ "Parameter estimates:" "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat " "<0 rows> (or 0-length row.names)" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -24,6 +25,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.387 0.272 0.033 0.328 0.953 0.00440 0.016 3806 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 3 Parameter prior distributions" @@ -37,6 +39,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.618 0.247 0.131 0.643 0.983 0.00404 0.016 3723 1.002" "omega[0.1,1] 0.303 0.208 0.035 0.255 0.796 0.00344 0.017 3664 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 4 Parameter prior distributions" @@ -49,6 +52,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.391 0.270 0.036 0.333 0.950 0.00431 0.016 3941 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 5 Parameter prior distributions" @@ -62,6 +66,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.597 0.259 0.109 0.622 0.982 0.00430 0.017 3625 1.000" "omega[0.05,1] 0.252 0.201 0.020 0.194 0.756 0.00346 0.017 3383 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 6 Parameter prior distributions" @@ -75,6 +80,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.602 0.251 0.125 0.621 0.982 0.00400 0.016 3942 1.000" "omega[0.5,1] 0.203 0.188 0.005 0.144 0.704 0.00382 0.020 2428 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 7 Parameter prior distributions" @@ -89,6 +95,7 @@ "omega[0.025,0.05] 0.703 0.214 0.234 0.743 0.989 0.00356 0.017 3616 1.000" "omega[0.05,0.5] 0.432 0.222 0.078 0.412 0.879 0.00377 0.017 3473 1.000" "omega[0.5,1] 0.150 0.150 0.003 0.101 0.568 0.00303 0.020 2467 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 8 Parameter prior distributions" @@ -100,6 +107,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PET 0.937 0.499 0.103 0.903 2.009 0.00538 0.011 8615 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 9 Parameter prior distributions" @@ -111,6 +119,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PEESE 2.159 1.140 0.231 2.081 4.579 0.01249 0.011 8339 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 10 Parameter prior distributions" @@ -122,6 +131,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.296 0.278 0.046 0.222 0.975 0.00302 0.011 8468 1.007" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 11 Parameter prior distributions" @@ -135,6 +145,7 @@ "tau 0.227 0.190 0.040 0.173 0.707 0.00220 0.012 7425 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,1] 0.442 0.274 0.044 0.405 0.960 0.00418 0.015 4293 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 12 Parameter prior distributions" @@ -149,6 +160,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.640 0.238 0.161 0.668 0.985 0.00385 0.016 3822 1.001" "omega[0.1,1] 0.338 0.214 0.045 0.298 0.828 0.00326 0.015 4314 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 13 Parameter prior distributions" @@ -162,6 +174,7 @@ "tau 0.245 0.219 0.041 0.186 0.783 0.00249 0.011 7694 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.447 0.271 0.047 0.412 0.959 0.00390 0.014 4831 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 14 Parameter prior distributions" @@ -176,6 +189,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.617 0.248 0.129 0.643 0.985 0.00413 0.017 3605 1.001" "omega[0.05,1] 0.283 0.205 0.029 0.234 0.779 0.00325 0.016 3974 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 15 Parameter prior distributions" @@ -190,6 +204,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.637 0.239 0.159 0.667 0.984 0.00395 0.017 3661 1.000" "omega[0.5,1] 0.214 0.194 0.005 0.155 0.717 0.00337 0.017 3298 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 16 Parameter prior distributions" @@ -205,6 +220,7 @@ "omega[0.025,0.05] 0.718 0.207 0.252 0.756 0.990 0.00346 0.017 3583 1.000" "omega[0.05,0.5] 0.461 0.219 0.092 0.448 0.890 0.00362 0.016 3676 1.000" "omega[0.5,1] 0.158 0.152 0.004 0.109 0.558 0.00280 0.018 2933 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 17 Parameter prior distributions" @@ -217,6 +233,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.215 0.228 0.036 0.153 0.726 0.00234 0.010 9504 1.000" "PET 0.885 0.535 0.068 0.819 2.053 0.00648 0.012 6804 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 18 Parameter prior distributions" @@ -229,6 +246,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.235 0.244 0.037 0.167 0.812 0.00261 0.011 8772 1.000" "PEESE 2.092 1.225 0.179 1.979 4.730 0.01332 0.011 8457 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 19 Parameter prior distributions" @@ -240,6 +258,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.474 0.215 0.048 0.475 0.891 0.00221 0.010 9468 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 20 Parameter prior distributions" @@ -253,6 +272,7 @@ "mu 0.395 0.211 0.000 0.388 0.824 0.00245 0.012 7451 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,1] 0.518 0.270 0.068 0.515 0.973 0.00404 0.015 4479 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 21 Parameter prior distributions" @@ -267,6 +287,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.672 0.228 0.187 0.709 0.988 0.00370 0.016 3799 1.001" "omega[0.1,1] 0.398 0.222 0.059 0.370 0.858 0.00332 0.015 4493 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 22 Parameter prior distributions" @@ -280,6 +301,7 @@ "mu 0.394 0.220 -0.031 0.392 0.825 0.00262 0.012 7045 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.564 0.262 0.086 0.579 0.977 0.00369 0.014 5027 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 23 Parameter prior distributions" @@ -294,6 +316,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.671 0.230 0.178 0.709 0.988 0.00375 0.016 3773 1.000" "omega[0.05,1] 0.383 0.226 0.046 0.351 0.857 0.00359 0.016 3975 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 24 Parameter prior distributions" @@ -308,6 +331,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.685 0.221 0.208 0.724 0.988 0.00346 0.016 4076 1.001" "omega[0.5,1] 0.301 0.228 0.009 0.254 0.812 0.00376 0.016 3678 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 25 Parameter prior distributions" @@ -323,6 +347,7 @@ "omega[0.025,0.05] 0.746 0.195 0.291 0.791 0.992 0.00322 0.017 3668 1.001" "omega[0.05,0.5] 0.505 0.217 0.114 0.504 0.907 0.00352 0.016 3778 1.001" "omega[0.5,1] 0.219 0.185 0.006 0.170 0.669 0.00328 0.018 3177 1.004" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 26 Parameter prior distributions" @@ -335,6 +360,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.207 0.326 -0.547 0.242 0.758 0.00759 0.023 1844 1.000" "PET 0.755 0.686 0.026 0.556 2.619 0.01728 0.025 1575 1.002" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 27 Parameter prior distributions" @@ -347,6 +373,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.269 0.271 -0.307 0.282 0.767 0.00452 0.017 3601 1.001" "PEESE 1.487 1.205 0.050 1.199 4.463 0.02210 0.018 2975 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 28 Parameter prior distributions" @@ -359,6 +386,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu 0.452 0.267 -0.077 0.456 0.974 0.00297 0.011 8117 1.002" "tau 0.205 0.206 0.036 0.142 0.734 0.00248 0.012 6884 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 29 Parameter prior distributions" @@ -373,6 +401,7 @@ "tau 0.189 0.168 0.036 0.139 0.636 0.00198 0.012 7242 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.533 0.265 0.078 0.531 0.974 0.00401 0.015 4380 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 30 Parameter prior distributions" @@ -388,6 +417,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.679 0.226 0.199 0.715 0.989 0.00367 0.016 3791 1.001" "omega[0.1,1] 0.406 0.218 0.068 0.381 0.856 0.00318 0.015 4715 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 31 Parameter prior distributions" @@ -402,6 +432,7 @@ "tau 0.207 0.208 0.038 0.147 0.727 0.00242 0.012 7362 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,1] 0.565 0.261 0.087 0.581 0.977 0.00379 0.015 4734 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 32 Parameter prior distributions" @@ -417,6 +448,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.674 0.227 0.188 0.710 0.987 0.00347 0.015 4270 1.001" "omega[0.05,1] 0.390 0.225 0.045 0.364 0.857 0.00333 0.015 4565 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 33 Parameter prior distributions" @@ -432,6 +464,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.680 0.224 0.197 0.717 0.987 0.00345 0.015 4232 1.001" "omega[0.5,1] 0.270 0.227 0.006 0.208 0.804 0.00403 0.018 3174 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 34 Parameter prior distributions" @@ -448,6 +481,7 @@ "omega[0.025,0.05] 0.743 0.198 0.282 0.787 0.991 0.00340 0.017 3388 1.000" "omega[0.05,0.5] 0.509 0.217 0.117 0.507 0.904 0.00368 0.017 3488 1.001" "omega[0.5,1] 0.205 0.184 0.004 0.151 0.668 0.00348 0.019 2807 1.002" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 35 Parameter prior distributions" @@ -461,6 +495,7 @@ "mu 0.168 0.375 -0.681 0.208 0.801 0.00800 0.021 2197 1.000" "tau 0.222 0.225 0.038 0.154 0.810 0.00269 0.012 6985 1.001" "PET 0.790 0.725 0.025 0.577 2.710 0.01689 0.023 1844 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 36 Parameter prior distributions" @@ -474,3 +509,4 @@ "mu 0.189 0.354 -0.591 0.220 0.804 0.00603 0.017 3447 1.001" "tau 0.252 0.281 0.039 0.168 0.953 0.00409 0.015 4721 1.002" "PEESE 1.764 1.492 0.061 1.404 5.499 0.02901 0.019 2643 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/6.txt b/tests/results/summary.individual/6.txt index 33ece920..339c3205 100644 --- a/tests/results/summary.individual/6.txt +++ b/tests/results/summary.individual/6.txt @@ -12,6 +12,7 @@ "Parameter estimates:" "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat " "<0 rows> (or 0-length row.names)" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -24,6 +25,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.428 0.271 0.045 0.381 0.958 0.00414 0.015 4300 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 3 Parameter prior distributions" @@ -37,6 +39,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.631 0.237 0.158 0.656 0.983 0.00371 0.016 4094 1.000" "omega[0.1,1] 0.323 0.204 0.045 0.281 0.793 0.00297 0.015 4721 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 4 Parameter prior distributions" @@ -49,6 +52,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.421 0.271 0.044 0.372 0.957 0.00415 0.015 4248 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 5 Parameter prior distributions" @@ -62,6 +66,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.606 0.249 0.126 0.627 0.982 0.00410 0.016 3679 1.000" "omega[0.05,1] 0.271 0.203 0.028 0.216 0.776 0.00339 0.017 3576 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 6 Parameter prior distributions" @@ -75,6 +80,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.616 0.243 0.145 0.639 0.984 0.00377 0.016 4138 1.000" "omega[0.5,1] 0.210 0.192 0.005 0.150 0.710 0.00347 0.018 3065 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 7 Parameter prior distributions" @@ -89,6 +95,7 @@ "omega[0.025,0.05] 0.707 0.211 0.243 0.745 0.988 0.00343 0.016 3774 1.000" "omega[0.05,0.5] 0.446 0.216 0.090 0.429 0.877 0.00341 0.016 4026 1.002" "omega[0.5,1] 0.153 0.152 0.003 0.103 0.571 0.00326 0.021 2187 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 8 Parameter prior distributions" @@ -100,6 +107,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PET 0.899 0.485 0.091 0.859 1.945 0.00533 0.011 8257 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 9 Parameter prior distributions" @@ -111,6 +119,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "PEESE 1.870 1.024 0.186 1.797 4.046 0.01077 0.011 9037 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 10 Parameter prior distributions" @@ -122,6 +131,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.296 0.271 0.044 0.219 0.987 0.00301 0.011 8101 1.004" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 11 Parameter prior distributions" @@ -135,6 +145,7 @@ "tau 0.227 0.195 0.039 0.173 0.731 0.00234 0.012 6897 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.478 0.271 0.061 0.453 0.969 0.00403 0.015 4515 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 12 Parameter prior distributions" @@ -149,6 +160,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.653 0.233 0.174 0.685 0.985 0.00369 0.016 4000 1.000" "omega[0.1,1] 0.368 0.217 0.054 0.336 0.845 0.00320 0.015 4615 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 13 Parameter prior distributions" @@ -162,6 +174,7 @@ "tau 0.245 0.213 0.039 0.185 0.788 0.00246 0.012 7507 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.462 0.270 0.055 0.428 0.962 0.00404 0.015 4475 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 14 Parameter prior distributions" @@ -176,6 +189,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.625 0.243 0.144 0.655 0.984 0.00397 0.016 3744 1.000" "omega[0.05,1] 0.306 0.208 0.035 0.259 0.793 0.00319 0.015 4251 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 15 Parameter prior distributions" @@ -190,6 +204,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.644 0.237 0.165 0.673 0.987 0.00379 0.016 3907 1.001" "omega[0.5,1] 0.222 0.200 0.006 0.160 0.742 0.00381 0.019 2749 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 16 Parameter prior distributions" @@ -205,6 +220,7 @@ "omega[0.025,0.05] 0.731 0.200 0.275 0.772 0.991 0.00324 0.016 3823 1.003" "omega[0.05,0.5] 0.478 0.217 0.109 0.467 0.894 0.00355 0.016 3721 1.001" "omega[0.5,1] 0.167 0.158 0.004 0.118 0.588 0.00295 0.019 2884 1.003" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 17 Parameter prior distributions" @@ -217,6 +233,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.221 0.232 0.037 0.157 0.765 0.00250 0.011 8658 1.000" "PET 0.852 0.520 0.069 0.787 2.004 0.00623 0.012 6972 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 18 Parameter prior distributions" @@ -229,6 +246,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "tau 0.245 0.240 0.038 0.177 0.846 0.00259 0.011 8525 1.000" "PEESE 1.829 1.112 0.142 1.715 4.326 0.01282 0.012 7523 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 19 Parameter prior distributions" @@ -240,6 +258,7 @@ "Parameter estimates:" " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu -0.481 0.223 -0.921 -0.480 -0.047 0.00221 0.010 10143 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 20 Parameter prior distributions" @@ -253,6 +272,7 @@ "mu -0.405 0.221 -0.849 -0.401 0.010 0.00257 0.012 7436 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,1] 0.540 0.264 0.084 0.542 0.975 0.00378 0.014 4852 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 21 Parameter prior distributions" @@ -267,6 +287,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,0.1] 0.685 0.222 0.209 0.724 0.988 0.00352 0.016 3990 1.003" "omega[0.1,1] 0.418 0.220 0.072 0.395 0.870 0.00316 0.014 4838 1.002" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 22 Parameter prior distributions" @@ -280,6 +301,7 @@ "mu -0.405 0.235 -0.869 -0.405 0.050 0.00278 0.012 7137 1.000" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.582 0.259 0.099 0.599 0.981 0.00401 0.015 4169 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 23 Parameter prior distributions" @@ -294,6 +316,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.676 0.226 0.191 0.712 0.987 0.00366 0.016 3808 1.000" "omega[0.05,1] 0.396 0.223 0.053 0.370 0.856 0.00346 0.016 4159 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 24 Parameter prior distributions" @@ -308,6 +331,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.05,0.5] 0.692 0.220 0.205 0.728 0.988 0.00349 0.016 3965 1.000" "omega[0.5,1] 0.304 0.232 0.009 0.255 0.823 0.00381 0.016 3699 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 25 Parameter prior distributions" @@ -323,6 +347,7 @@ "omega[0.025,0.05] 0.752 0.192 0.300 0.796 0.992 0.00332 0.017 3359 1.001" "omega[0.05,0.5] 0.520 0.215 0.126 0.523 0.913 0.00360 0.017 3567 1.001" "omega[0.5,1] 0.231 0.190 0.006 0.183 0.685 0.00325 0.017 3425 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 26 Parameter prior distributions" @@ -335,6 +360,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu -0.235 0.313 -0.784 -0.262 0.451 0.00627 0.020 2501 1.002" "PET 0.681 0.607 0.024 0.512 2.295 0.01375 0.023 1947 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 27 Parameter prior distributions" @@ -347,6 +373,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu -0.287 0.275 -0.794 -0.297 0.282 0.00424 0.015 4195 1.000" "PEESE 1.286 1.059 0.045 1.023 3.937 0.01859 0.018 3248 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 28 Parameter prior distributions" @@ -359,6 +386,7 @@ " Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat" "mu -0.449 0.278 -0.985 -0.451 0.105 0.00321 0.012 7498 1.001" "tau 0.210 0.227 0.037 0.146 0.743 0.00272 0.012 6922 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 29 Parameter prior distributions" @@ -373,6 +401,7 @@ "tau 0.190 0.181 0.036 0.138 0.656 0.00212 0.012 7276 1.001" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.560 0.260 0.097 0.569 0.979 0.00380 0.015 4697 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 30 Parameter prior distributions" @@ -388,6 +417,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.1] 0.699 0.214 0.231 0.734 0.988 0.00356 0.017 3606 1.000" "omega[0.1,1] 0.428 0.219 0.080 0.408 0.873 0.00339 0.015 4168 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 31 Parameter prior distributions" @@ -402,6 +432,7 @@ "tau 0.211 0.214 0.039 0.148 0.743 0.00251 0.012 7256 1.001" "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,1] 0.583 0.258 0.100 0.604 0.980 0.00377 0.015 4675 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 32 Parameter prior distributions" @@ -417,6 +448,7 @@ "omega[0,0.025] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.025,0.05] 0.682 0.224 0.202 0.719 0.988 0.00371 0.017 3654 1.001" "omega[0.05,1] 0.401 0.225 0.056 0.376 0.861 0.00343 0.015 4312 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 33 Parameter prior distributions" @@ -432,6 +464,7 @@ "omega[0,0.05] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.000" "omega[0.05,0.5] 0.688 0.221 0.204 0.726 0.988 0.00342 0.016 4147 1.001" "omega[0.5,1] 0.281 0.228 0.006 0.222 0.799 0.00436 0.019 2730 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 34 Parameter prior distributions" @@ -448,6 +481,7 @@ "omega[0.025,0.05] 0.751 0.191 0.308 0.791 0.992 0.00310 0.016 3793 1.001" "omega[0.05,0.5] 0.524 0.213 0.133 0.528 0.908 0.00340 0.016 3908 1.001" "omega[0.5,1] 0.211 0.186 0.004 0.156 0.669 0.00338 0.018 3035 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 35 Parameter prior distributions" @@ -461,6 +495,7 @@ "mu -0.179 0.373 -0.808 -0.212 0.674 0.00741 0.020 2540 1.000" "tau 0.227 0.238 0.038 0.154 0.842 0.00299 0.013 6359 1.000" "PET 0.742 0.675 0.023 0.565 2.525 0.01545 0.023 1912 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 36 Parameter prior distributions" @@ -474,3 +509,4 @@ "mu -0.196 0.363 -0.803 -0.230 0.611 0.00635 0.018 3259 1.002" "tau 0.253 0.278 0.038 0.165 0.964 0.00398 0.014 4879 1.001" "PEESE 1.550 1.302 0.054 1.232 4.834 0.02397 0.018 2948 1.002" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/7.txt b/tests/results/summary.individual/7.txt index 044323e1..72f7f97a 100644 --- a/tests/results/summary.individual/7.txt +++ b/tests/results/summary.individual/7.txt @@ -17,6 +17,7 @@ "tau 0.216 0.209 0.038 0.153 0.767 0.00263 0.013 6290 1.000" "omega[0,0.1] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.1,1] 0.624 0.245 0.139 0.649 0.984 0.00359 0.015 4649 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -30,3 +31,4 @@ "mu 0.207 0.340 -0.518 0.227 0.826 0.00490 0.014 4821 1.001" "tau 0.223 0.223 0.037 0.155 0.809 0.00271 0.012 6751 1.001" "PET 0.665 0.512 0.024 0.556 1.917 0.00656 0.013 6085 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/8.txt b/tests/results/summary.individual/8.txt index b1344e6f..b998cbeb 100644 --- a/tests/results/summary.individual/8.txt +++ b/tests/results/summary.individual/8.txt @@ -12,3 +12,4 @@ "Parameter estimates:" "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat " "<0 rows> (or 0-length row.names)" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary.individual/9.txt b/tests/results/summary.individual/9.txt index a35d5f73..00c71f95 100644 --- a/tests/results/summary.individual/9.txt +++ b/tests/results/summary.individual/9.txt @@ -19,6 +19,7 @@ "tau 0.216 0.209 0.038 0.153 0.767 0.00263 0.013 6290 1.000" "omega[0,0.1] 1.000 0.000 1.000 1.000 1.000 NA NA NA 1.001" "omega[0.1,1] 0.624 0.245 0.139 0.649 0.984 0.00359 0.015 4649 1.001" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "" " " " Model 2 Parameter prior distributions" @@ -32,3 +33,4 @@ "mu 0.207 0.340 -0.518 0.227 0.826 0.00490 0.014 4821 1.001" "tau 0.223 0.223 0.037 0.155 0.809 0.00271 0.012 6751 1.001" "PET 0.665 0.512 0.024 0.556 1.917 0.00656 0.013 6085 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary/1.txt b/tests/results/summary/1.txt index fe806152..b84aa4c5 100644 --- a/tests/results/summary/1.txt +++ b/tests/results/summary/1.txt @@ -20,4 +20,5 @@ "omega[0.975,1] 0.801 1.000 0.027 1.000" "PET 0.110 0.000 0.000 1.310" "PEESE 0.087 0.000 0.000 1.571" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "(Estimated publication weights omega correspond to one-sided p-values.)" diff --git a/tests/results/summary/10.txt b/tests/results/summary/10.txt index 42a0349b..e4df5d63 100644 --- a/tests/results/summary/10.txt +++ b/tests/results/summary/10.txt @@ -16,4 +16,5 @@ "tau 0.210 0.148 0.037 0.725" "omega[0,0.1] 1.000 1.000 1.000 1.000" "omega[0.1,1] 0.500 0.500 0.500 0.500" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "(Estimated publication weights omega correspond to one-sided p-values.)" diff --git a/tests/results/summary/11.txt b/tests/results/summary/11.txt index 4769a6fb..4349f267 100644 --- a/tests/results/summary/11.txt +++ b/tests/results/summary/11.txt @@ -17,4 +17,5 @@ "omega[0,0.1] 1.000 1.000 1.000 1.000" "omega[0.1,1] 0.886 1.000 0.200 1.000" "PET 0.383 0.000 0.000 1.679" +"The estimates are summarized on the none scale (priors were specified on the none scale)." "(Estimated publication weights omega correspond to two-sided p-values.)" diff --git a/tests/results/summary/12.txt b/tests/results/summary/12.txt index d99bed49..7c5c52ea 100644 --- a/tests/results/summary/12.txt +++ b/tests/results/summary/12.txt @@ -13,3 +13,4 @@ " Mean Median 0.025 0.975" "mu 0.448 0.467 0.000 0.885" "tau 0.000 0.000 0.000 0.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary/13.txt b/tests/results/summary/13.txt index 66bfc438..5b52c8b3 100644 --- a/tests/results/summary/13.txt +++ b/tests/results/summary/13.txt @@ -23,6 +23,7 @@ "omega[0.975,1] 0.802 1.000 0.026 1.000" "PET 0.108 0.000 0.000 1.254" "PEESE 0.088 0.000 0.000 1.615" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "(Estimated publication weights omega correspond to one-sided p-values.)" "Model (6): ESS 427 is lower than the set target (500)." "Model (7): ESS 408 is lower than the set target (500)." diff --git a/tests/results/summary/2.txt b/tests/results/summary/2.txt index f5185c4e..f2664808 100644 --- a/tests/results/summary/2.txt +++ b/tests/results/summary/2.txt @@ -15,4 +15,5 @@ "omega[0,0.05] 1.000 1.000 1.000 1.000" "omega[0.05,0.1] 0.787 0.993 0.125 1.000" "omega[0.1,1] 0.720 0.983 0.083 1.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "(Estimated publication weights omega correspond to two-sided p-values.)" diff --git a/tests/results/summary/3.txt b/tests/results/summary/3.txt index 8ecfe058..f248c00d 100644 --- a/tests/results/summary/3.txt +++ b/tests/results/summary/3.txt @@ -14,3 +14,4 @@ "tau 0.108 0.000 0.000 0.627" "PET 0.264 0.000 0.000 1.647" "PEESE 0.213 0.000 0.000 2.679" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary/4.txt b/tests/results/summary/4.txt index a031508f..475d8bdb 100644 --- a/tests/results/summary/4.txt +++ b/tests/results/summary/4.txt @@ -20,4 +20,5 @@ "omega[0.975,1] 0.792 1.000 0.025 1.000" "PET 0.107 0.000 0.000 1.302" "PEESE 0.087 0.000 0.000 1.542" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "(Estimated publication weights omega correspond to one-sided p-values.)" diff --git a/tests/results/summary/5.txt b/tests/results/summary/5.txt index 1760d6c9..142f67b2 100644 --- a/tests/results/summary/5.txt +++ b/tests/results/summary/5.txt @@ -21,4 +21,5 @@ "omega[0.975,1] 0.796 1.000 0.025 1.000" "PET 0.120 0.000 0.000 1.389" "PEESE 0.120 0.000 0.000 2.137" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "(Estimated publication weights omega correspond to one-sided p-values.)" diff --git a/tests/results/summary/6.txt b/tests/results/summary/6.txt index da84c3ce..5fdceecf 100644 --- a/tests/results/summary/6.txt +++ b/tests/results/summary/6.txt @@ -21,4 +21,5 @@ "omega[0.975,1] 0.803 1.000 0.026 1.000" "PET 0.110 0.000 0.000 1.313" "PEESE 0.088 0.000 0.000 1.589" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "(Estimated publication weights omega correspond to one-sided p-values.)" diff --git a/tests/results/summary/7.txt b/tests/results/summary/7.txt index 9cffaacd..3b33b776 100644 --- a/tests/results/summary/7.txt +++ b/tests/results/summary/7.txt @@ -18,4 +18,5 @@ "omega[0,0.1] 1.000 1.000 1.000 1.000" "omega[0.1,1] 0.833 1.000 0.210 1.000" "PET 0.371 0.100 0.000 1.732" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "(Estimated publication weights omega correspond to one-sided p-values.)" diff --git a/tests/results/summary/8.txt b/tests/results/summary/8.txt index 44f52140..7097ade0 100644 --- a/tests/results/summary/8.txt +++ b/tests/results/summary/8.txt @@ -13,3 +13,4 @@ " Mean Median 0.025 0.975" "mu 0.000 0.000 0.000 0.000" "tau 0.000 0.000 0.000 0.000" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." diff --git a/tests/results/summary/9.txt b/tests/results/summary/9.txt index 61a53a62..dd7dc038 100644 --- a/tests/results/summary/9.txt +++ b/tests/results/summary/9.txt @@ -20,4 +20,5 @@ "omega[0,0.1] 1.000 1.000 1.000 1.000" "omega[0.1,1] 0.833 1.000 0.210 1.000" "PET 0.371 0.100 0.000 1.732" +"The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." "(Estimated publication weights omega correspond to one-sided p-values.)" diff --git a/tests/testthat/test-0-CRAN.R b/tests/testthat/test-0-CRAN.R index 5a66cdb2..813f7875 100644 --- a/tests/testthat/test-0-CRAN.R +++ b/tests/testthat/test-0-CRAN.R @@ -52,6 +52,7 @@ test_that("Basic functionality works", { "omega[0.975,1] 0.781 1.000 0.017 1.000" , "PET 0.045 0.000 0.000 0.641" , "PEESE 0.045 0.000 0.000 0.614" , + "The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale).", "(Estimated publication weights omega correspond to one-sided p-values.)" , "\033[0;31mModel (2): ESS 45 is lower than the set target (500).\033[0m" , "\033[0;31mModel (3): ESS 39 is lower than the set target (500).\033[0m" , diff --git a/tests/testthat/test-4-fit.R b/tests/testthat/test-4-fit.R index 5c116bb2..0c6c5751 100644 --- a/tests/testthat/test-4-fit.R +++ b/tests/testthat/test-4-fit.R @@ -192,7 +192,7 @@ test_that("3-level models work", { #### creating / updating the test settings #### if(FALSE){ - saved_fits <- list(fit1, fit2, fit3, fit4, fit5, fit6, fit7, fit8, fit9, fit10, fit11, fit12) + saved_fits <- list(fit1, fit2, fit3, fit4, fit5, fit6, fit7, fit8, fit9, fit10, fit11, fit12, fit13) for(i in 1:length(saved_fits)){ saved_fits[[i]] <- remove_time(saved_fits[[i]]) diff --git a/tests/testthat/test-5-methods.R b/tests/testthat/test-5-methods.R index 83163b5c..c4aa3c67 100644 --- a/tests/testthat/test-5-methods.R +++ b/tests/testthat/test-5-methods.R @@ -36,10 +36,10 @@ test_that("Summary functions work", { "" , "Robust Bayesian meta-analysis" , "Components summary:" , - " Models Prior prob. Post. prob. Inclusion log(1/BF)" , - "Effect 18/36 0.500 0.493 0.026" , - "Heterogeneity 18/36 0.500 0.462 0.153" , - "Bias 32/36 0.500 0.540 -0.159" , + " Models Prior prob. Post. prob. log(Exclusion BF)" , + "Effect 18/36 0.500 0.493 0.026" , + "Heterogeneity 18/36 0.500 0.462 0.153" , + "Bias 32/36 0.500 0.540 -0.159" , "" , "Model-averaged estimates:" , " Mean Median 0.1 0.5 0.9" , @@ -53,6 +53,7 @@ test_that("Summary functions work", { "omega[0.975,1] 0.801 1.000 0.136 1.000 1.000" , "PET 0.110 0.000 0.000 0.000 0.401" , "PEESE 0.087 0.000 0.000 0.000 0.000" , + "The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale).", "(Estimated publication weights omega correspond to one-sided p-values.)", "" , "Conditional estimates:" , @@ -67,6 +68,7 @@ test_that("Summary functions work", { "omega[0.975,1] 0.435 0.304 0.040 0.304 1.000" , "PET 0.825 0.753 0.167 0.753 1.564" , "PEESE 1.690 1.540 0.347 1.540 3.201" , + "The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale).", "(Estimated publication weights omega correspond to one-sided p-values.)") ) @@ -117,10 +119,12 @@ test_that("Summary functions work", { " Mean Median 0.025 0.975" , "mu 0.000 0.000 0.000 0.000" , "tau 0.000 0.000 0.000 0.000" , + "The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale).", "" , "Conditional estimates:" , "[1] Mean Median 0.025 0.975 " , - "<0 rows> (or 0-length row.names)") + "<0 rows> (or 0-length row.names)" , + "The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale).") ) }) @@ -143,7 +147,7 @@ test_that("Models summary functions work", { "" , "Robust Bayesian meta-analysis" , "Models overview:" , - " Model Prior Effect Prior Heterogeneity Prior Bias Prior prob. log(marglik) Post. prob. Inclusion BF", + " Model Prior Effect Prior Heterogeneity Prior Bias Prior prob. log(marglik) Post. prob. Inclusion BF", " 1 S(0) S(0) 0.083 -2.90 0.043 0.499", " 2 S(0) S(0) omega[2s: .1] ~ CumD(1, 1) 0.083 -2.60 0.059 0.686", " 3 S(0) S(0) PET ~ N(0, 1)[0, Inf] 0.083 -1.46 0.185 2.492", @@ -301,7 +305,8 @@ test_that("Individual summary functions work", { "mu 0.353 0.275 -0.195 0.357 0.883 0.00306 0.011 8076 1.000" , "tau 0.211 0.204 0.037 0.149 0.738 0.00249 0.012 6744 1.000" , "omega[0,0.1] 1.000 0.000 1.000 1.000 1.000 NA NA NA NA" , - "omega[0.1,1] 0.500 0.000 0.500 0.500 0.500 NA NA NA NA" + "omega[0.1,1] 0.500 0.000 0.500 0.500 0.500 NA NA NA NA" , + "The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." )) # test no spikes @@ -320,7 +325,8 @@ test_that("Individual summary functions work", { "" , "Parameter estimates:" , "[1] Mean SD lCI Median uCI error(MCMC) error(MCMC)/SD ESS R-hat ", - "<0 rows> (or 0-length row.names)" + "<0 rows> (or 0-length row.names)" , + "The estimates are summarized on the Cohen's d scale (priors were specified on the Cohen's d scale)." )) @@ -346,7 +352,11 @@ test_that("Interpret functions work", { #### creating / updating the test settings #### if(FALSE){ - saved_fits <- readRDS(file = "tests/results/saved_fits.RDS") + saved_files <- paste0("fit_", 1:13, ".RDS") + saved_fits <- list() + for(i in seq_along(saved_files)){ + saved_fits[[i]] <- readRDS(file = file.path("tests/results/fits", saved_files[i])) + } # generate print files for(i in seq_along(saved_fits)){