update documentation

DESCRIPTION

@@ -17,7 +17,7 @@ License: GPL-3
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.1
+RoxygenNote: 7.2.3
 Imports: 
     Rcpp (>= 1.0.2),
     nleqslv,

R/main.R

@@ -66,7 +66,7 @@
 #'   "max_iter" = 9999,
 #'   "alpha"    = .10
 #'   )
-#' \donttest{m1.EM <- zcurve(OSC.z, method = "EM", bootstrap = FALSE, control = ctr1)}
+#' \dontrun{m1.EM <- zcurve(OSC.z, method = "EM", bootstrap = FALSE, control = ctr1)}
 #' # see '?control_EM' and '?control_density' for more information about different
 #' # z-curves specifications
 #' @seealso [summary.zcurve()], [plot.zcurve()], [control_EM], [control_density]
@@ -556,7 +556,7 @@ print.summary.zcurve <- function(x, ...){
 #' @export plot.zcurve
 #' @rawNamespace S3method(plot, zcurve)
 #' 
-#' @examples 
+#' @examples \dontrun{
 #' # simulate some z-statistics and fit a z-curve
 #' z <- abs(rnorm(300,3))
 #' m.EM <- zcurve(z, method = "EM", bootstrap = 100)
@@ -569,6 +569,7 @@ print.summary.zcurve <- function(x, ...){
 #' 
 #' # change the location of the annotation to the left
 #' plot(m.EM, annotation = TRUE, CI = TRUE, x_text = 0)
+#' }
 #' @seealso [zcurve()]
 plot.zcurve          <- function(x, annotation = FALSE, CI = FALSE, extrapolate = FALSE, plot_type = "base",
                                  y.anno = c(.95, .88, .78, .71, .61, .53, .43, .35), x.anno = .6, cex.anno = 1, ...){

R/zcurve_EM.R

@@ -234,7 +234,7 @@
 #'    fit_reps  = 50,
 #'    mu = c(0, 1.5, 3, 4.5, 6)
 #' )
-#' \donttest{zcurve(OSC.z, method = "EM", control = ctrl)}
+#' \dontrun{zcurve(OSC.z, method = "EM", control = ctrl)}
 #' 
 #' @seealso [zcurve()], [control_density]
 NULL

R/zcurve_density.R

@@ -193,7 +193,7 @@
 #'    version   = 1,
 #'    max_iter  = 300
 #' )
-#' \donttest{zcurve(OSC.z, method = "density", control = ctrl)}
+#' \dontrun{zcurve(OSC.z, method = "density", control = ctrl)}
 #' 
 #' @seealso [zcurve()], [control_density], [control_EM]
 NULL
@@ -349,7 +349,7 @@ NULL
 #'    max_iter  = 300,
 #'    criterion = 1e-4
 #' )
-#' \donttest{zcurve(OSC.z, method = "density", control = ctrl)}
+#' \dontrun{zcurve(OSC.z, method = "density", control = ctrl)}
 #' 
 #' @seealso [zcurve()], [control_density_v1], [control_EM]
 NULL