(#9)create r container for test

docker-compose.yaml

@@ -4,6 +4,7 @@ services:
   notebook:
     container_name: notebook
     build: .
+    image: msr2021replication
     ports:
       - 8888:8888
       - 40000:40000
@@ -15,13 +16,4 @@ services:
       - ./output/:/app/output
       - ./output/so_results:/app/output/so_results
       - ./extra_stop_words:/app/extra_stop_words
-
-  notebook-test:
-    container_name: notebook-test
-    build:
-      context: .
-      dockerfile: DockerfileTest
-    volumes:
-      - './notebook/:/home/notebook'
-    command:
-      bash -c "pytest -vv --cov"
+      - ./tests:/app/tests

dockerfiler

@@ -0,0 +1,16 @@
+FROM rocker/r-base:latest
+
+# Instalar pacotes R necessários
+RUN R -e "install.packages(c('ggplot2', 'reshape2', 'nortest'), repos='http://cran.rstudio.com/')"
+RUN apt-get update && apt-get install -y libmpfr-dev
+RUN R -e "install.packages('PMCMRplus', repos='http://cran.rstudio.com/')"
+
+# Copiar o código R e a pasta data para dentro do contêiner
+COPY notebook/tests.r /app/tests.r
+COPY data /app/data
+
+# Diretório de trabalho dentro do contêiner
+WORKDIR /app
+
+# Comando para executar o script R
+CMD ["Rscript", "/app/tests.r"]

makefile

@@ -23,3 +23,6 @@ process:
 results:
 	python3 notebook/manage_results.py
 	clear
+
+test:
+	docker exec notebook pytest tests/unit/ -vv 

notebook/requirements.txt

@@ -1,2 +1,5 @@
 nltk
-pandas==1.5
+pandas==1.5
+pytest==7.0.1
+pytest-cov==3.0.0
+coverage==6.4.4

notebook/tests.r

@@ -4,11 +4,9 @@ library(ggplot2)
 library(reshape2)
 library(nortest)
 
-setwd("/Users/gianlucascoccia/Desktop/MSR2021/analysis/notebook")
-
 # Load data
-so = read.csv("../data/processed/so_test_data.csv", header = TRUE)
-gh = read.csv("../data/processed/gh_test_data.csv", header = TRUE)
+so = read.csv("/app/data/processed/so_test_data.csv", header = TRUE)
+gh = read.csv("/app/data/processed/gh_test_data.csv", header = TRUE)
 
 # Extract relevant columns from dataframes 
 so_data = matrix(c(so$time_topic_2, so$time_topic_5, so$time_topic_1, so$time_topic_11, so$time_topic_4, so$time_topic_13,