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When I use the ip link add command on two Ubuntu systems to create an eth1.100 VLAN sub-interface and enable the ISIS protocol on the interface, I find that the sub-interface can not only establish an ISIS neighbor with the eth1.100 port of another Ubuntu, but also establish an ISIS neighbor with the eth1 port.
R1 configuration:
R2 configuration:
R1 show isis neighbor
R2 show isis neighbor