analysis.yml

name: analysis
channels:
  - conda-forge
  - defaults
  - tttpob
dependencies:
  - r-base
  - radian
  - r-languageserver
  - r-tidyverse
  - r-ggplot2
  - r-readr # read csv used in American Gut
  - r-psych # factor analysis in lecture 17
  - r-mvn # multi-variate normality in lecture 12
  - r-nortest # normality tests in lecture 11
  - r-car # homoscedasticity in lecture 12
  - r-caret # for machine learning # kNN, rf, svm lecture 16, createFold, trainControl
  - r-pwr # power analysis # lecture 12
  - r-boot # bootstrap # lecture 15
  - r-ape # contains phylogenetic dataset, used in lecture 14 glm # muticolinarity
  - r-perm # permutation tests lecture 15
  - r-class # kNN lecture 16
  - r-clue # needed for cl-prediction in lecture 17
  - r-rocr # graph the ROC in lecutre 18
  - r-datasaurus # simpson's paradox
  - r-snftool # used in SNFtool.R, SNFtool.Rmd
  - r-data.table # used to read tsv file
  - r-matrix 
  - r-pheatmap 
  - r-umap
  - r-doparallel # used in my assignment9(pheatmap) and also lecture 24
  - r-foreach
  - r-vscdebugger # used in .vsc.attach()
  - r-snow # used for parallel processing
  - r-compositions # used for composition data with PCA for microbiome study
  - r-metafor # meta-analysis workshop
  - r-kableExtra # meta-analysis workshop
  - r-foreach # used in lecture 24
  - r-microbenchmark # used in lecture 24
  - r-rcpp # used in lecture 24