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The CDT version is 0.6.0 (as you can see in the first line of the output)
Problem: When I viewed the target, I found there exists a loop among PIP2, PIP3 and plcg(The top 3 nodes in my screenshot).
As far as I know, Sachs Dataset should be a DAG, so I checked the paper where the graph came from, Causal-Protein-Signaling-Networks-Derived-from-Multiparameter-Single-Cell-Data(Sachs,etc 2005) to make sure.
According to the paper, PIP3 should point to PIP2 . Moreover, there are a total of 20 edges in the diagram of the paper, but the function, cdt.data.load_dataset('sachs'), outputs a graph with only 18 edges. So I would like to know if the Sachs dataset is updated or if there are errors and missing edges in the graph from this function.
The text was updated successfully, but these errors were encountered:
Hello ! Thanks for the feedback ! I know that this dataset does have multiple versions (and revisions) ; I'll check and get back to you ! My version could be out-of-date
The CDT version is 0.6.0 (as you can see in the first line of the output)
Problem: When I viewed the target, I found there exists a loop among PIP2, PIP3 and plcg(The top 3 nodes in my screenshot).
As far as I know, Sachs Dataset should be a DAG, so I checked the paper where the graph came from, Causal-Protein-Signaling-Networks-Derived-from-Multiparameter-Single-Cell-Data(Sachs,etc 2005) to make sure.
According to the paper, PIP3 should point to PIP2 . Moreover, there are a total of 20 edges in the diagram of the paper, but the function, cdt.data.load_dataset('sachs'), outputs a graph with only 18 edges. So I would like to know if the Sachs dataset is updated or if there are errors and missing edges in the graph from this function.
The text was updated successfully, but these errors were encountered: