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Zygote-0.6.64 precompile error with julia-1.9.3 #1457

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voroskoi opened this issue Sep 17, 2023 · 1 comment
Closed

Zygote-0.6.64 precompile error with julia-1.9.3 #1457

voroskoi opened this issue Sep 17, 2023 · 1 comment

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@voroskoi
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Hi,

I try to install zygote-0.6.64 with julia-1.9.3, but it fails on precompile step with the error below:

julia> Pkg.precompile("Zygote"; strict=true)
Precompiling Zygote
  ✗ Zygote
  0 dependencies successfully precompiled in 16 seconds. 56 already precompiled.

ERROR: The following 1 dependency failed to precompile:

Zygote [e88e6eb3-aa80-5325-afca-941959d7151f]

Failed to precompile Zygote [e88e6eb3-aa80-5325-afca-941959d7151f] to "/home/voroskoi/.julia/compiled/v1.9/Zygote/jl_rZ7rSE".
Illegal inttoptr
          %magicptr = ptrtoint {} addrspace(10)* %242 to i64, !dbg !26

[82350] signal (6.-6): Aborted
in expression starting at /home/voroskoi/.julia/packages/Zygote/4SSHS/src/precompile.jl:13
unknown function (ip: 0x7fd1d868e83c)
raise at /usr/bin/../lib/libc.so.6 (unknown line)
abort at /usr/bin/../lib/libc.so.6 (unknown line)
unknown function (ip: 0x7fd1d7a7dff7)
unknown function (ip: 0x7fd1d7ba8d88)
_ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
unknown function (ip: 0x7fd1d7ba7db8)
_ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
unknown function (ip: 0x7fd1d7ba85f8)
_ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
unknown function (ip: 0x7fd1d7ba6081)
unknown function (ip: 0x7fd1d7b13f0f)
unknown function (ip: 0x7fd1d7b148ac)
_ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
unknown function (ip: 0x7fd1d7b0baea)
_ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
_ZN4llvm3orc19MaterializationTask3runEv at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
unknown function (ip: 0x7fd1d305ac6b)
_ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
_ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
unknown function (ip: 0x7fd1d307cf7e)
_ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolStringPtrENS0_11SymbolStateE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS_8ArrayRefIPNS0_8JITDylibEEENS0_15SymbolStringPtrENS0_11SymbolStateE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
_ZN4llvm3orc16ExecutionSession6lookupENS_8ArrayRefIPNS0_8JITDylibEEENS_9StringRefENS0_11SymbolStateE at /usr/bin/../lib/julia/../libLLVM-15.so (unknown line)
unknown function (ip: 0x7fd1d7b0f059)
unknown function (ip: 0x7fd1d7b10a69)
unknown function (ip: 0x7fd1d7b11882)
jl_generate_fptr_impl at /usr/bin/../lib/julia/libjulia-codegen.so.1 (unknown line)
jl_compile_method_internal at /usr/bin/../lib/julia/libjulia-internal.so.1 (unknown line)
ijl_apply_generic at /usr/bin/../lib/julia/libjulia-internal.so.1 (unknown line)
#166 at ./none:0
iterate at ./generator.jl:47 [inlined]
collect_to! at ./array.jl:840
collect_to_with_first! at ./array.jl:818
unknown function (ip: 0x7fd196f939f5)
collect at ./array.jl:792
unknown function (ip: 0x7fd196f8e716)
prune! at /home/voroskoi/.julia/packages/IRTools/jcpZw/src/passes/passes.jl:181
|> at ./operators.jl:907 [inlined]
#IR#15 at /home/voroskoi/.julia/packages/IRTools/jcpZw/src/ir/wrap.jl:151 [inlined]
IR at /home/voroskoi/.julia/packages/IRTools/jcpZw/src/ir/wrap.jl:146 [inlined]
code_ir at /home/voroskoi/.julia/packages/Zygote/4SSHS/src/compiler/interface.jl:428
unknown function (ip: 0x7fd196f652e8)
unknown function (ip: 0x7fd1d7c64e2c)
unknown function (ip: 0x7fd1d7c6460a)
unknown function (ip: 0x7fd1d7c6572b)
unknown function (ip: 0x7fd1d7c6660e)
unknown function (ip: 0x7fd1d7c82942)
unknown function (ip: 0x7fd1d7c83359)
ijl_toplevel_eval_in at /usr/bin/../lib/julia/libjulia-internal.so.1 (unknown line)
unknown function (ip: 0x7fd1bebbd6fe)
unknown function (ip: 0x7fd1be86d3b8)
unknown function (ip: 0x7fd1be86d4f2)
unknown function (ip: 0x7fd1be86d50f)
jl_f__call_latest at /usr/bin/../lib/julia/libjulia-internal.so.1 (unknown line)
include at /home/voroskoi/.julia/packages/Zygote/4SSHS/src/Zygote.jl:1 [inlined]
macro expansion at /home/voroskoi/.julia/packages/Requires/Z8rfN/src/Requires.jl:40 [inlined]
precompile at /home/voroskoi/.julia/packages/Zygote/4SSHS/src/Zygote.jl:63
macro expansion at /home/voroskoi/.julia/packages/PrecompileTools/kmH5L/src/workloads.jl:78 [inlined]
top-level scope at /home/voroskoi/.julia/packages/Zygote/4SSHS/src/Zygote.jl:84
unknown function (ip: 0x7fd1d7c82cfc)
unknown function (ip: 0x7fd1d7c83011)
unknown function (ip: 0x7fd1d7c83359)
ijl_toplevel_eval_in at /usr/bin/../lib/julia/libjulia-internal.so.1 (unknown line)
unknown function (ip: 0x7fd1bebbd6fe)
unknown function (ip: 0x7fd1be86d3b8)
unknown function (ip: 0x7fd1be6ab891)
unknown function (ip: 0x7fd1be6abab2)
unknown function (ip: 0x7fd1d7c64e2c)
unknown function (ip: 0x7fd1d7c6460a)
unknown function (ip: 0x7fd1d7c6572b)
unknown function (ip: 0x7fd1d7c6660e)
unknown function (ip: 0x7fd1d7c82942)
unknown function (ip: 0x7fd1d7c83359)
ijl_toplevel_eval_in at /usr/bin/../lib/julia/libjulia-internal.so.1 (unknown line)
unknown function (ip: 0x7fd1bebbd6fe)
unknown function (ip: 0x7fd1bec59fdc)
unknown function (ip: 0x7fd1bec5a49f)
unknown function (ip: 0x7fd1bec5a5a8)
unknown function (ip: 0x7fd1d7cb0ff0)
jl_repl_entrypoint at /usr/bin/../lib/julia/libjulia-internal.so.1 (unknown line)
main at /usr/bin/julia (unknown line)
unknown function (ip: 0x7fd1d8627ccf)
__libc_start_main at /usr/bin/../lib/libc.so.6 (unknown line)
_start at /usr/bin/julia (unknown line)
Allocations: 16079812 (Pool: 16069899; Big: 9913); GC: 24
Stacktrace:
 [1] precompile(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Bool, Tuple{Symbol}, NamedTuple{(:strict,), Tuple{Bool}}})
   @ Pkg.API /usr/share/julia/stdlib/v1.9/Pkg/src/API.jl:156
 [2] #precompile#115
   @ /usr/share/julia/stdlib/v1.9/Pkg/src/API.jl:144 [inlined]
 [3] precompile
   @ /usr/share/julia/stdlib/v1.9/Pkg/src/API.jl:144 [inlined]
 [4] #precompile#114
   @ /usr/share/julia/stdlib/v1.9/Pkg/src/API.jl:143 [inlined]
 [5] top-level scope
   @ REPL[2]:1
julia>

I can reproduce this after removing whole ~/.julia directory and installing just zygote with Pkg.add("Zygote").

This seems to be some code generation/llvm incompatibility issue, but I do not know julia internals, so no idea what additional information could be relevant here. Let me know if I should add something else.

Thanks,
@voroskoi voroskoi mentioned this issue Sep 17, 2023
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@voroskoi
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I have found #1435 and JuliaLang/julia#50153

Solution here: https://wiki.archlinux.org/title/Julia

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@voroskoi