From 05f15fad2c29855cafc19439bdb9fe5bce904314 Mon Sep 17 00:00:00 2001 From: Joost de Folter Date: Fri, 9 Feb 2024 15:33:25 +0100 Subject: [PATCH] Updated template params file for modified Omero parameters --- resources/params.yml | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/resources/params.yml b/resources/params.yml index 8f74a6e..d399178 100644 --- a/resources/params.yml +++ b/resources/params.yml @@ -9,16 +9,18 @@ input: host: ssl://omero.server # include - Omero project id(s) / dataset id(s) / image id(s) to include include: + dummy: dummy project: [0, 1] dataset: [0, 1] image: [0, 1] + regex: [] # exclude - Omero project id(s) / dataset id(s) / image id(s) to exclude exclude: + dummy: dummy project: [0, 1] dataset: [0, 1] image: [0, 1] - # labels - required Omero metadata labels (optional) - #labels: [label1,label2] + regex: [] # pixel_size - source magnification (if not in metadata) #pixel_size: 1 @@ -41,7 +43,7 @@ output: # npyramid_add - number of pyramid size levels to add npyramid_add: 3 # pyramid_downsample - factor each pyramid level is down-sampled - pyramid_downsample: 4.0 + pyramid_downsample: 2 # thumbnail_size - can be a factor between 0 and 1 or maximum pixel size (single value) thumbnail_size: 1000 csv: resources/csv/labels.csv