tcga_molecular_lookup.json

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{"dataset":"brca","name":"copy number (gistic2)","collection":"tcga_brca_gistic2_ucsc-xena","default":true,"type":"cnv","schema":"hugo_sample"},
{"dataset":"brca","name":"miRNA isoform expression (IlluminaGA)","collection":"tcga_brca_mirna_ga_ucsc-xena","default":false,"type":"expr","schema":"chr_sample"},
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{"dataset":"brca","name":"protein expression RPPA (RBN)","collection":"tcga_brca_rppa_rbn_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"brca","name":"gene expression RNAseq (ployA+ IlluminaHiSeq pancan normalized)","collection":"tcga_brca_exp_hiseqv2_pancan_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"brca","name":"somatic gene-level non-silent mutation (wustl curated)","collection":"tcga_brca_mutation_curated_wustl_gene_ucsc-xena","default":true,"type":"mut01","schema":"hugo_sample"},
{"dataset":"brca","name":"DNA methylation (Methylation450k)","collection":"tcga_brca_hmethyl450_ucsc-xena","default":true,"type":"meth","schema":"methprobe_sample"},
{"dataset":"brca","name":"copy number (delete germline cnv)","collection":"tcga_brca_gsnp6nocnv_ucsc-xena","default":false,"type":"cnv","schema":"chr_sample"},
{"dataset":"brca","name":"copy number segments (delete germline cnv)","collection":"tcga_brca_gsnp6nocnv_gseg_ucsc-xena","default":false,"type":"cnv","schema":"sample_pos"},
{"dataset":"brca","name":"gene expression RNAseq (polyA+ IlluminaHiSeq)","collection":"tcga_brca_exp_hiseqv2_ucsc-xena","default":true,"type":"expr","schema":"hugo_sample"},
{"dataset":"brca","name":"somatic gene-level non-silent mutation (wustl)","collection":"tcga_brca_mutation_wustl_gene_ucsc-xena","default":false,"type":"mut01","schema":"hugo_sample"},
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{"dataset":"brca","name":"copy number (gistic2_thresholded)","collection":"tcga_brca_gistic2thd_ucsc-xena","default":true,"type":"cnv_thd","schema":"hugo_sample"},
{"dataset":"brca","name":"copy number segments","collection":"tcga_brca_gsnp6raw_gseg_ucsc-xena","default":false,"type":"cnv","schema":"sample_pos"},
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{"dataset":"brca","name":"DNA methylation (Methylation27k)","collection":"tcga_brca_hmethyl27_ucsc-xena","default":false,"type":"meth","schema":"methprobe_sample"},
{"dataset":"brca","name":"gene expression RNAseq (polyA+ IlluminaHiSeq percentile)","collection":"tcga_brca_exp_hiseqv2_percentile_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"brca","name":"gene expression (AgilentG4502A_07_3)","collection":"tcga_brca_g4502a_07_3_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"brca","name":"miRNA isoform expression (IlluminaHiseq)","collection":"tcga_brca_mirna_hiseq_ucsc-xena","default":false,"type":"expr","schema":"chr_sample"},
{"dataset":"brca","name":"Phenotypes","collection":"brca_clinicalmatrix_ucsc-xena","default":false,"type":"clin","schema":""},
{"dataset":"brca","name":"copy number","collection":"tcga_brca_gsnp6raw_ucsc-xena","default":false,"type":"cnv","schema":"chr_sample"},
{"dataset":"brca","name":"exon expression RNAseq (polyA+ IlluminaHiSeq)","collection":"tcga_brca_exp_hiseqv2_exon_ucsc-xena","default":false,"type":"expr","schema":"chr_sample"},
{"dataset":"esca","name":"protein expression RPPA","collection":"tcga_esca_rppa_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"esca","name":"copy number (gistic2)","collection":"tcga_esca_gistic2_ucsc-xena","default":true,"type":"cnv","schema":"hugo_sample"},
{"dataset":"esca","name":"exon expression RNAseq (polyA+ IlluminaHiseq)","collection":"tcga_esca_exp_hiseq_exon_ucsc-xena","default":false,"type":"expr","schema":"chr_sample"},
{"dataset":"esca","name":"gene expression RNAseq (ployA+ IlluminaHiSeq pancan normalized)","collection":"tcga_esca_exp_hiseqv2_pancan_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
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{"dataset":"esca","name":"copy number (gistic2_thresholded)","collection":"tcga_esca_gistic2thd_ucsc-xena","default":true,"type":"cnv_thd","schema":"hugo_sample"},
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{"dataset":"esca","name":"gene expression RNAseq (polyA+ IlluminaHiseq)","collection":"tcga_esca_exp_hiseq_ucsc-xena","default":true,"type":"expr","schema":"hugo_sample"},
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{"dataset":"esca","name":"DNA methylation (Methylation450k)","collection":"tcga_esca_hmethyl450_ucsc-xena","default":true,"type":"meth","schema":"methprobe_sample"},
{"dataset":"gbm","name":"protein expression RPPA","collection":"tcga_gbm_rppa_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
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{"dataset":"gbm","name":"protein expression RPPA (RBN)","collection":"tcga_gbm_rppa_rbn_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"gbm","name":"Phenotypes","collection":"gbm_clinicalmatrix_ucsc-xena","default":false,"type":"clin","schema":""},
{"dataset":"gbm","name":"gene expression (AffyU133a)","collection":"tcga_gbm_exp_u133a_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"gbm","name":"gene expression RNAseq (ployA+ IlluminaHiSeq pancan normalized)","collection":"tcga_gbm_exp_hiseqv2_pancan_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"gbm","name":"DNA methylation (Methylation450k)","collection":"tcga_gbm_hmethyl450_ucsc-xena","default":true,"type":"meth","schema":"methprobe_sample"},
{"dataset":"gbm","name":"copy number (delete germline cnv)","collection":"tcga_gbm_gsnp6nocnv_ucsc-xena","default":false,"type":"cnv","schema":"chr_sample"},
{"dataset":"gbm","name":"copy number segments (delete germline cnv)","collection":"tcga_gbm_gsnp6nocnv_gseg_ucsc-xena","default":false,"type":"cnv","schema":"sample_pos"},
{"dataset":"gbm","name":"gene expression RNAseq (polyA+ IlluminaHiSeq)","collection":"tcga_gbm_exp_hiseqv2_ucsc-xena","default":true,"type":"expr","schema":"hugo_sample"},
{"dataset":"gbm","name":"gene expression (AgilentG4502A_07_1)","collection":"tcga_gbm_g4502a_07_1_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"gbm","name":"somatic mutation SNPs and small INDELs (ucsc automated)","collection":"tcga_gbm_mutation_ucsc_maf_ucsc-xena","default":false,"type":"mut","schema":"sample_pos"},
{"dataset":"gbm","name":"copy number (gistic2_thresholded)","collection":"tcga_gbm_gistic2thd_ucsc-xena","default":true,"type":"cnv_thd","schema":"hugo_sample"},
{"dataset":"gbm","name":"copy number segments","collection":"tcga_gbm_gsnp6raw_gseg_ucsc-xena","default":false,"type":"cnv","schema":"sample_pos"},
{"dataset":"gbm","name":"somatic gene-level non-silent mutation (pancan awg)","collection":"tcga_gbm_mutation_ucsc-xena","default":false,"type":"mut01","schema":"hugo_sample"},
{"dataset":"gbm","name":"somatic gene-level non-silent mutation (ucsc automated)","collection":"tcga_gbm_mutation_ucsc_maf_gene_ucsc-xena","default":false,"type":"mut01","schema":"hugo_sample"},
{"dataset":"gbm","name":"somatic mutation SNPs and small INDELs (broad)","collection":"tcga_gbm_mutation_broad_ucsc-xena","default":false,"type":"mut","schema":"sample_pos"},
{"dataset":"gbm","name":"DNA methylation (Methylation27k)","collection":"tcga_gbm_hmethyl27_ucsc-xena","default":false,"type":"meth","schema":"methprobe_sample"},
{"dataset":"gbm","name":"gene expression RNAseq (polyA+ IlluminaHiSeq percentile)","collection":"tcga_gbm_exp_hiseqv2_percentile_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"gbm","name":"miRNA isoform expression (IlluminaHiseq)","collection":"tcga_gbm_mirna_hiseq_ucsc-xena","default":false,"type":"expr","schema":"chr_sample"},
{"dataset":"gbm","name":"gene expression (AgilentG4502A_07_2)","collection":"tcga_gbm_g4502a_07_2_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"gbm","name":"copy number","collection":"tcga_gbm_gsnp6raw_ucsc-xena","default":false,"type":"cnv","schema":"chr_sample"},
{"dataset":"hnsc","name":"protein expression RPPA","collection":"tcga_hnsc_rppa_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"hnsc","name":"copy number (gistic2)","collection":"tcga_hnsc_gistic2_ucsc-xena","default":true,"type":"cnv","schema":"hugo_sample"},
{"dataset":"hnsc","name":"miRNA isoform expression (IlluminaGA)","collection":"tcga_hnsc_mirna_ga_ucsc-xena","default":false,"type":"expr","schema":"chr_sample"},
{"dataset":"hnsc","name":"exon expression RNAseq (polyA+ IlluminaHiSeq)","collection":"tcga_hnsc_exp_hiseqv2_exon_ucsc-xena","default":false,"type":"expr","schema":"chr_sample"},
{"dataset":"hnsc","name":"protein expression RPPA (RBN)","collection":"tcga_hnsc_rppa_rbn_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"hnsc","name":"somatic gene-level non-silent mutation (broad curated)","collection":"tcga_hnsc_mutation_curated_broad_gene_ucsc-xena","default":true,"type":"mut01","schema":"hugo_sample"},
{"dataset":"hnsc","name":"somatic mutation SNPs and small INDELs (broad curated)","collection":"tcga_hnsc_mutation_curated_broad_ucsc-xena","default":false,"type":"mut","schema":"sample_pos"},
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{"dataset":"hnsc","name":"DNA methylation (Methylation450k)","collection":"tcga_hnsc_hmethyl450_ucsc-xena","default":true,"type":"meth","schema":"methprobe_sample"},
{"dataset":"hnsc","name":"Phenotypes","collection":"hnsc_clinicalmatrix_ucsc-xena","default":false,"type":"clin","schema":""},
{"dataset":"hnsc","name":"copy number (delete germline cnv)","collection":"tcga_hnsc_gsnp6nocnv_ucsc-xena","default":false,"type":"cnv","schema":"chr_sample"},
{"dataset":"hnsc","name":"copy number segments (delete germline cnv)","collection":"tcga_hnsc_gsnp6nocnv_gseg_ucsc-xena","default":false,"type":"cnv","schema":"sample_pos"},
{"dataset":"hnsc","name":"gene expression RNAseq (polyA+ IlluminaHiSeq)","collection":"tcga_hnsc_exp_hiseqv2_ucsc-xena","default":true,"type":"expr","schema":"hugo_sample"},
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{"dataset":"hnsc","name":"copy number segments","collection":"tcga_hnsc_gsnp6raw_gseg_ucsc-xena","default":false,"type":"cnv","schema":"sample_pos"},
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{"dataset":"hnsc","name":"somatic gene-level non-silent mutation (bcgsc automated)","collection":"tcga_hnsc_mutation_bcgsc_gene_ucsc-xena","default":false,"type":"mut01","schema":"hugo_sample"},
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{"dataset":"kich","name":"protein expression RPPA","collection":"tcga_kich_rppa_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
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{"dataset":"kich","name":"miRNA isoform expression (IlluminaHiseq)","collection":"tcga_kich_mirna_hiseq_ucsc-xena","default":false,"type":"expr","schema":"chr_sample"},
{"dataset":"kich","name":"copy number (gistic2)","collection":"tcga_kich_gistic2_ucsc-xena","default":false,"type":"cnv","schema":"hugo_sample"},
{"dataset":"kich","name":"gene expression RNAseq (polyA+ IlluminaHiSeq)","collection":"tcga_kich_exp_hiseqv2_ucsc-xena","default":true,"type":"expr","schema":"hugo_sample"},
{"dataset":"kich","name":"somatic gene-level non-silent mutation (broad)","collection":"tcga_kich_mutation_broad_gene_ucsc-xena","default":true,"type":"mut01","schema":"hugo_sample"},
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{"dataset":"kich","name":"copy number","collection":"tcga_kich_gsnp6raw_ucsc-xena","default":false,"type":"cnv","schema":"chr_sample"},
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{"dataset":"kich","name":"DNA methylation (Methylation450k)","collection":"tcga_kich_hmethyl450_ucsc-xena","default":true,"type":"meth","schema":"methprobe_sample"},
{"dataset":"kirc","name":"protein expression RPPA","collection":"tcga_kirc_rppa_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
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{"dataset":"kirc","name":"gene expression RNAseq (polyA+ IlluminaHiSeq percentile)","collection":"tcga_kirc_exp_hiseqv2_percentile_ucsc-xena","default":false,"type":"expr","schema":"hugo_sample"},
{"dataset":"kirc","name":"miRNA isoform expression (IlluminaGA)","collection":"tcga_kirc_mirna_ga_ucsc-xena","default":false,"type":"expr","schema":"chr_sample"},
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{"dataset":"kirc","name":"DNA methylation (Methylation450k)","collection":"tcga_kirc_hmethyl450_ucsc-xena","default":true,"type":"meth","schema":"methprobe_sample"},
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{"dataset":"kirp","name":"Phenotypes","collection":"kirp_clinicalmatrix_ucsc-xena","default":false,"type":"clin","schema":""},
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