Plot proportion on boxplot

FredHutch · Feb 16, 2024 · 96128cc · 96128cc
1 parent 6fce296
commit 96128cc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/plot_metagenomes.py b/bin/plot_metagenomes.py
@@ -253,7 +253,7 @@ def plot(self, meta_cname, output_folder):
 
         # Boxplot comparing gene bin abundances by sample group
         self.box(
-            self.adata.to_df().reindex(index=sample_order),
+            self.adata.to_df("prop").reindex(index=sample_order),
             self.adata.obs[meta_cname].reindex(index=sample_order),
             meta_cname,
             "Gene Bin Abundance",