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Soheil and Jenny have had issues pulling up lncRNAs - check to make sure these aren't being filtered/removed from the counts. Jenny is using GRCh 38 annotations, so we likely just need to map between the BCCA (GRCh 37) and kallisto (GRCh 38) gene annotations.
The text was updated successfully, but these errors were encountered:
The reference genome used is no longer an issue, as the user can toggle between GRCh37 and GRCh38 now. I did some quick tests using the following lncRNAs, and the app could not identify them:
CTC-205M6.2
RP11-507K2.3
U91328.21
AC069513.4
However, the app WAS able to find this lncRNA:
AC003092.1
So this still needs further investigation & a solution.
Soheil and Jenny have had issues pulling up lncRNAs - check to make sure these aren't being filtered/removed from the counts. Jenny is using GRCh 38 annotations, so we likely just need to map between the BCCA (GRCh 37) and kallisto (GRCh 38) gene annotations.
The text was updated successfully, but these errors were encountered: