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Ensure that lncRNAs are included in dataset #10

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amanda-hi opened this issue May 19, 2020 · 1 comment
Open

Ensure that lncRNAs are included in dataset #10

amanda-hi opened this issue May 19, 2020 · 1 comment
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@amanda-hi
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Soheil and Jenny have had issues pulling up lncRNAs - check to make sure these aren't being filtered/removed from the counts. Jenny is using GRCh 38 annotations, so we likely just need to map between the BCCA (GRCh 37) and kallisto (GRCh 38) gene annotations.

@amanda-hi
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The reference genome used is no longer an issue, as the user can toggle between GRCh37 and GRCh38 now. I did some quick tests using the following lncRNAs, and the app could not identify them:

  • CTC-205M6.2
  • RP11-507K2.3
  • U91328.21
  • AC069513.4

However, the app WAS able to find this lncRNA:

  • AC003092.1

So this still needs further investigation & a solution.

@amanda-hi amanda-hi self-assigned this Jan 5, 2022
@Logan-Wallace Logan-Wallace added the bug Something isn't working label Sep 4, 2024
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