Merge pull request #32 from FredHutch/matrix-gha-jsons

Adding inputs and options jsons to matrix approach
FredHutch · Dec 18, 2024 · 62a3659 · 62a3659
2 parents 64ea23e + a3b8bd1
commit 62a3659
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Showing 8 changed files with 26 additions and 8 deletions.
diff --git a/.github/workflows/cromwell-test-run.yml b/.github/workflows/cromwell-test-run.yml
@@ -12,9 +12,9 @@ jobs:
     strategy:
       matrix:
         wdl:
-          - helloHostname/helloHostname.wdl
-          - helloModuleHostname/helloModuleHostname.wdl
-          - helloDockerHostname/helloDockerHostname.wdl
+          - helloHostname
+          - helloModuleHostname
+          - helloDockerHostname
     steps:
       -
         name: Checkout
@@ -30,5 +30,5 @@ jobs:
         run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/cromwell-86.jar
       -
         name: Execute Test Run of WDL Workflows
-        run: java -jar cromwell-86.jar run ${{ matrix.wdl }}
+        run: java -jar cromwell-86.jar run ${{ matrix.wdl }}/${{ matrix.wdl }}.wdl -i ${{ matrix.wdl }}/inputs.json -o ${{ matrix.wdl }}/options.json
 
diff --git a/.github/workflows/womtools-validate.yml b/.github/workflows/womtools-validate.yml
@@ -15,9 +15,9 @@ jobs:
     strategy:
       matrix:
         wdl:
-          - helloHostname/helloHostname.wdl
-          - helloModuleHostname/helloModuleHostname.wdl
-          - helloDockerHostname/helloDockerHostname.wdl
+          - helloHostname
+          - helloModuleHostname
+          - helloDockerHostname
     steps:
       -
         name: Checkout
@@ -33,7 +33,7 @@ jobs:
         run: wget -q https://github.com/broadinstitute/cromwell/releases/download/86/womtool-86.jar
       -
         name: Validate WDL Scripts
-        run: java -jar womtool-86.jar validate ${{ matrix.wdl }}
+        run: java -jar womtool-86.jar validate ${{ matrix.wdl }}/${{ matrix.wdl }}.wdl -i ${{ matrix.wdl }}/inputs.json
 
 
 
diff --git a/helloDockerHostname/inputs.json b/helloDockerHostname/inputs.json
@@ -0,0 +1 @@
+{}
diff --git a/helloDockerHostname/options.json b/helloDockerHostname/options.json
@@ -0,0 +1,5 @@
+{
+    "workflow_failure_mode": "ContinueWhilePossible",
+    "write_to_cache": false,
+    "read_from_cache": false
+}
diff --git a/helloHostname/inputs.json b/helloHostname/inputs.json
@@ -0,0 +1 @@
+{}
diff --git a/helloHostname/options.json b/helloHostname/options.json
@@ -0,0 +1,5 @@
+{
+    "workflow_failure_mode": "ContinueWhilePossible",
+    "write_to_cache": false,
+    "read_from_cache": false
+}
diff --git a/helloModuleHostname/inputs.json b/helloModuleHostname/inputs.json
@@ -0,0 +1 @@
+{}
diff --git a/helloModuleHostname/options.json b/helloModuleHostname/options.json
@@ -0,0 +1,5 @@
+{
+    "workflow_failure_mode": "ContinueWhilePossible",
+    "write_to_cache": false,
+    "read_from_cache": false
+}