DESCRIPTION

Package: Palimpsest
Title: Package
Version: 2.0.0
Authors@R: c(person(given = "Jayendra",family = "Shinde", email = "jayendra.shinde91@gmail.com", role =
    c("aut", "cre")),person(given = "Eric",family = "Letouzé", email = "eric.letouze@inserm.fr", role = 
    c("aut","cre")),person(given = "Benedict",family = "Monteiro", email = "benedictmonteiro1@gmail.com", role = 
    c("aut","cre")))
Author: Jayendra Shinde, Eric Letouzé, Benedict Monteiro
Maintainer: Jayendra Shinde <jayendra.shinde91@gmail.com>,
    Eric Letouzé <eric.letouze@inserm.fr>, Benedict Monteiro <benedictmonteiro1@gmail.com>
Description: An R package for studying mutational and structural variant signatures
    along clonal evolution in cancer.
License: MIT + file LICENSE
Imports:
    reshape2 (>= 1.4.1),
    plyr (>= 1.8.3),
    ggplot2 (>= 3.1.0),
    gtools,
    lsa,
    gplots,       
    IRanges (>= 2.6.0),
    RCircos,
    plotrix,
    Rgraphviz,
    Biostrings (>= 2.40.0),
    VariantAnnotation,
    Biobase,
    registry,
    doParallel,
    RColorBrewer, 
    scales,
    spgs,
    tibble,
    ggpubr
Depends:
    R (>= 3.5.0),
    dplyr,
    NMF,
    GenomicRanges
Suggests:
    BiocStyle (>= 2.0.3),
    BSgenome.Hsapiens.UCSC.hg19 (>= 1.4.0),
    biomaRt (>= 2.28.0),
    testthat
biocViews: SomaticMutation
Encoding: UTF-8
LazyData: true
ByteCompile: true
RoxygenNote: 7.1.0