environment-snapshot.yml

name: DeepArk
channels:
  - pytorch
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - blas=1.0=mkl
  - ca-certificates=2019.5.15=1
  - certifi=2019.6.16=py36_1
  - cffi=1.12.3=py36h2e261b9_0
  - click=7.0=py36_0
  - cudatoolkit=10.0.130=0
  - cython=0.29.13=py36he6710b0_0
  - freetype=2.9.1=h8a8886c_1
  - intel-openmp=2019.4=243
  - jpeg=9b=h024ee3a_2
  - libedit=3.1.20181209=hc058e9b_0
  - libffi=3.2.1=hd88cf55_4
  - libgcc-ng=9.1.0=hdf63c60_0
  - libgfortran-ng=7.3.0=hdf63c60_0
  - libpng=1.6.37=hbc83047_0
  - libstdcxx-ng=9.1.0=hdf63c60_0
  - libtiff=4.0.10=h2733197_2
  - mkl=2019.4=243
  - mkl-service=2.3.0=py36he904b0f_0
  - mkl_fft=1.0.14=py36ha843d7b_0
  - mkl_random=1.0.2=py36hd81dba3_0
  - ncurses=6.1=he6710b0_1
  - ninja=1.9.0=py36hfd86e86_0
  - numpy=1.16.5=py36h7e9f1db_0
  - numpy-base=1.16.5=py36hde5b4d6_0
  - olefile=0.46=py36_0
  - openssl=1.0.2t=h7b6447c_1
  - pillow=6.1.0=py36h34e0f95_0
  - pip=19.2.2=py36_0
  - pycparser=2.19=py36_0
  - python=3.6.5=hc3d631a_2
  - pytorch=1.2.0=py3.6_cuda10.0.130_cudnn7.6.2_0
  - readline=7.0=h7b6447c_5
  - setuptools=41.0.1=py36_0
  - six=1.12.0=py36_0
  - sqlite=3.29.0=h7b6447c_0
  - tk=8.6.8=hbc83047_0
  - torchvision=0.4.0=py36_cu100
  - wheel=0.33.4=py36_0
  - xz=5.2.4=h14c3975_4
  - zlib=1.2.11=h7b6447c_3
  - zstd=1.3.7=h0b5b093_0
  - pip:
    - cycler==0.10.0
    - h5py==2.10.0
    - joblib==0.13.2
    - kiwisolver==1.1.0
    - matplotlib==3.1.1
    - pandas==0.25.1
    - patsy==0.5.1
    - plotly==4.1.1
    - pyfaidx==0.5.5.2
    - pyparsing==2.4.2
    - pytabix==0.1
    - python-dateutil==2.8.0
    - pytz==2019.2
    - pyyaml==5.1.2
    - retrying==1.3.3
    - scikit-learn==0.21.3
    - scipy==1.3.1
    - seaborn==0.9.0
    - selene-sdk==0.4.8
    - statsmodels==0.10.1