From 3c4bfcb5e491ee690f86a52045a15160ccd7ec0f Mon Sep 17 00:00:00 2001 From: Xin Guo Date: Mon, 9 Sep 2024 21:15:58 -0700 Subject: [PATCH] v1.2.0 --- README.md | 2 +- docs/index.html | 46 +++++++++++++++++++++++++++++----------------- 2 files changed, 30 insertions(+), 18 deletions(-) diff --git a/README.md b/README.md index 8761c65..5b9b3dc 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram - **Date: 2024-07-26** + **Date: 2024-09-04** [![Build Status](https://travis-ci.org/G3viz/g3viz.svg?branch=master)](https://travis-ci.org/G3viz/g3viz) [![CRAN_version](http://www.r-pkg.org/badges/version/g3viz)](https://cran.r-project.org/package=g3viz) diff --git a/docs/index.html b/docs/index.html index 7f0ac73..112492a 100644 --- a/docs/index.html +++ b/docs/index.html @@ -4079,25 +4079,37 @@

5 Session Info

#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 #> #> attached base packages: -#> [1] stats graphics grDevices utils datasets methods base +#> [1] stats4 stats graphics grDevices utils datasets methods base #> #> other attached packages: -#> [1] kableExtra_1.4.0 knitr_1.48 rmarkdown_2.28 g3viz_1.2.0 -#> -#> loaded via a namespace (and not attached): -#> [1] KEGGREST_1.36.3 xfun_0.47 httr2_1.0.3 bslib_0.8.0 colorspace_2.1-1 -#> [6] vctrs_0.6.5 htmltools_0.5.8.1 stats4_4.2.1 viridisLite_0.4.2 yaml_2.3.10 -#> [11] blob_1.2.4 rlang_1.1.2 jquerylib_0.1.4 glue_1.7.0 DBI_1.2.3 -#> [16] rappdirs_0.3.3 BiocGenerics_0.42.0 bit64_4.0.5 GenomeInfoDbData_1.2.8 lifecycle_1.0.4 -#> [21] stringr_1.5.1 zlibbioc_1.42.0 Biostrings_2.64.1 munsell_0.5.1 htmlwidgets_1.6.4 -#> [26] memoise_2.0.1 evaluate_0.24.0 Biobase_2.56.0 IRanges_2.30.1 fastmap_1.2.0 -#> [31] GenomeInfoDb_1.32.4 curl_5.2.1 AnnotationDbi_1.58.0 highr_0.11 Rcpp_1.0.13 -#> [36] scales_1.3.0 cachem_1.1.0 org.Hs.eg.db_3.15.0 S4Vectors_0.34.0 jsonlite_1.8.8 -#> [41] XVector_0.36.0 systemfonts_1.1.0 bit_4.0.5 png_0.1-8 digest_0.6.37 -#> [46] stringi_1.8.4 cli_3.6.3 tools_4.2.1 bitops_1.0-8 magrittr_2.0.3 -#> [51] sass_0.4.9 RCurl_1.98-1.13 RSQLite_2.3.7 crayon_1.5.3 pkgconfig_2.0.3 -#> [56] xml2_1.3.6 svglite_2.1.3 httr_1.4.7 rstudioapi_0.16.0 R6_2.5.1 -#> [61] compiler_4.2.1 +#> [1] cBioPortalData_2.8.2 MultiAssayExperiment_1.22.0 SummarizedExperiment_1.26.1 Biobase_2.56.0 +#> [5] GenomicRanges_1.48.0 GenomeInfoDb_1.32.4 IRanges_2.30.1 S4Vectors_0.34.0 +#> [9] BiocGenerics_0.42.0 MatrixGenerics_1.8.1 matrixStats_1.3.0 AnVIL_1.8.7 +#> [13] dplyr_1.1.4 kableExtra_1.4.0 knitr_1.48 rmarkdown_2.28 +#> [17] g3viz_1.2.0 +#> +#> loaded via a namespace (and not attached): +#> [1] bitops_1.0-8 bit64_4.0.5 progress_1.2.3 filelock_1.0.3 httr_1.4.7 +#> [6] GenomicDataCommons_1.20.3 bslib_0.8.0 tools_4.2.1 utf8_1.2.4 R6_2.5.1 +#> [11] DBI_1.2.3 colorspace_2.1-1 prettyunits_1.2.0 tidyselect_1.2.1 TCGAutils_1.16.1 +#> [16] bit_4.0.5 curl_5.2.1 compiler_4.2.1 rvest_1.0.4 httr2_1.0.3 +#> [21] cli_3.6.3 formatR_1.14 xml2_1.3.6 DelayedArray_0.22.0 sass_0.4.9 +#> [26] rtracklayer_1.56.1 scales_1.3.0 readr_2.1.5 rappdirs_0.3.3 rapiclient_0.1.6 +#> [31] RCircos_1.2.2 Rsamtools_2.12.0 systemfonts_1.1.0 stringr_1.5.1 digest_0.6.37 +#> [36] svglite_2.1.3 XVector_0.36.0 pkgconfig_2.0.3 htmltools_0.5.8.1 highr_0.11 +#> [41] dbplyr_2.5.0 fastmap_1.2.0 limma_3.52.4 htmlwidgets_1.6.4 rlang_1.1.2 +#> [46] rstudioapi_0.16.0 RSQLite_2.3.7 jquerylib_0.1.4 BiocIO_1.6.0 generics_0.1.3 +#> [51] jsonlite_1.8.8 BiocParallel_1.30.4 RCurl_1.98-1.13 magrittr_2.0.3 GenomeInfoDbData_1.2.8 +#> [56] futile.logger_1.4.3 Matrix_1.5-4.1 Rcpp_1.0.13 munsell_0.5.1 fansi_1.0.6 +#> [61] lifecycle_1.0.4 yaml_2.3.10 stringi_1.8.4 RaggedExperiment_1.20.1 RJSONIO_1.3-1.9 +#> [66] zlibbioc_1.42.0 org.Hs.eg.db_3.15.0 BiocFileCache_2.4.0 grid_4.2.1 blob_1.2.4 +#> [71] parallel_4.2.1 crayon_1.5.3 lattice_0.22-6 Biostrings_2.64.1 splines_4.2.1 +#> [76] GenomicFeatures_1.48.4 hms_1.1.3 KEGGREST_1.36.3 pillar_1.9.0 rjson_0.2.21 +#> [81] codetools_0.2-20 biomaRt_2.52.0 futile.options_1.0.1 XML_3.99-0.16 glue_1.7.0 +#> [86] evaluate_0.24.0 lambda.r_1.2.4 data.table_1.15.4 tzdb_0.4.0 png_0.1-8 +#> [91] vctrs_0.6.5 purrr_1.0.2 tidyr_1.3.1 cachem_1.1.0 xfun_0.47 +#> [96] restfulr_0.0.15 survival_3.7-0 viridisLite_0.4.2 tibble_3.2.1 RTCGAToolbox_2.26.1 +#> [101] GenomicAlignments_1.32.1 AnnotationDbi_1.58.0 memoise_2.0.1

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