diff --git a/README.md b/README.md index c9f425f..a1b8079 100644 --- a/README.md +++ b/README.md @@ -31,9 +31,8 @@ mutation.dat <- getMutationsFromCbioportal("msk_impact_2017", "TP53") # lollipop diagram with default options g3Lollipop(mutation.dat, gene.symbol = "TP53") ``` - > -> [live example](https://bl.ocks.org/phoeguo/raw/583a12e04c6b9d7ca1825cdbdc62f531/) +> [Live example](https://bl.ocks.org/phoeguo/raw/583a12e04c6b9d7ca1825cdbdc62f531/) > > > @@ -59,10 +58,11 @@ g3Lollipop(mutation.dat, factor.col = "Variant_Classification", plot.options = plot.options) ``` - -> Lollipop plot: +> +> [Live example](https://bl.ocks.org/phoeguo/raw/302a0ff5729f6aa773c33d4bfd3061c4/) > > +> #### - Example 3 @@ -111,11 +111,11 @@ g3Lollipop(mutation.dat, protein.change.col = protein.change.colname, plot.options = plot.options) ``` - -> Lollipop plot: +> +> [Live example](https://bl.ocks.org/phoeguo/raw/60f804c6683de30650e36ee912304754/) > > - +> ## diff --git a/TCGA.BRCA.varscan.somatic.PIK3CA.trimmed.maf b/TCGA.BRCA.varscan.somatic.PIK3CA.trimmed.maf new file mode 100644 index 0000000..23c58bd --- /dev/null +++ b/TCGA.BRCA.varscan.somatic.PIK3CA.trimmed.maf @@ -0,0 +1,362 @@ +Hugo_Symbol Chromosome Start_Position End_Position Variant_Classification Variant_Type HGVSp_Short Mutation_Class AA_Position +PIK3CA chr3 179199035 179199035 Silent SNP p.F70F Inframe 70 +PIK3CA chr3 179199066 179199066 Missense_Mutation SNP p.E81K Missense 81 +PIK3CA chr3 179199066 179199066 Missense_Mutation SNP p.E81K Missense 81 +PIK3CA chr3 179199073 179199073 Missense_Mutation SNP p.F83S Missense 83 +PIK3CA chr3 179199088 179199088 Missense_Mutation SNP p.R88Q Missense 88 +PIK3CA chr3 179199088 179199088 Missense_Mutation SNP p.R88Q Missense 88 +PIK3CA chr3 179199134 179199142 In_Frame_Del DEL p.E103_G106delinsD Inframe 103 +PIK3CA chr3 179199132 179199137 In_Frame_Del DEL p.E103_P104del Inframe 103 +PIK3CA chr3 179199136 179199136 Missense_Mutation SNP p.P104L Missense 104 +PIK3CA chr3 179199138 179199149 In_Frame_Del DEL p.V105_R108del Inframe 105 +PIK3CA chr3 179199141 179199149 In_Frame_Del DEL p.G106_R108del Inframe 106 +PIK3CA chr3 179199148 179199148 Missense_Mutation SNP p.R108H Missense 108 +PIK3CA chr3 179199152 179199160 In_Frame_Del DEL p.E109_I112delinsD Inframe 109 +PIK3CA chr3 179199150 179199152 In_Frame_Del DEL p.E110del Inframe 110 +PIK3CA chr3 179199150 179199152 In_Frame_Del DEL p.E110del Inframe 110 +PIK3CA chr3 179199156 179199164 In_Frame_Del DEL p.K111_L113del Inframe 111 +PIK3CA chr3 179199156 179199158 In_Frame_Del DEL p.K111del Inframe 111 +PIK3CA chr3 179199156 179199158 In_Frame_Del DEL p.K111del Inframe 111 +PIK3CA chr3 179199156 179199156 Missense_Mutation SNP p.K111E Missense 111 +PIK3CA chr3 179199158 179199158 Missense_Mutation SNP p.K111N Missense 111 +PIK3CA chr3 179199690 179199690 Missense_Mutation SNP p.G118D Missense 118 +PIK3CA chr3 179199690 179199690 Missense_Mutation SNP p.G118D Missense 118 +PIK3CA chr3 179199690 179199690 Missense_Mutation SNP p.G118D Missense 118 +PIK3CA chr3 179199690 179199690 Missense_Mutation SNP p.G118D Missense 118 +PIK3CA chr3 179199690 179199690 Missense_Mutation SNP p.G118D Missense 118 +PIK3CA chr3 179199772 179199772 Silent SNP p.N145N Inframe 145 +PIK3CA chr3 179203760 179203760 Missense_Mutation SNP p.V344M Missense 344 +PIK3CA chr3 179203763 179203763 Missense_Mutation SNP p.N345H Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203765 179203765 Missense_Mutation SNP p.N345K Missense 345 +PIK3CA chr3 179203764 179203764 Missense_Mutation SNP p.N345T Missense 345 +PIK3CA chr3 179203779 179203779 Missense_Mutation SNP p.D350G Missense 350 +PIK3CA chr3 179204537 179204537 Missense_Mutation SNP p.E365V Missense 365 +PIK3CA chr3 179204540 179204540 Missense_Mutation SNP p.P366R Missense 366 +PIK3CA chr3 179204540 179204540 Missense_Mutation SNP p.P366R Missense 366 +PIK3CA chr3 179209642 179209642 Missense_Mutation SNP p.R398H Missense 398 +PIK3CA chr3 179210192 179210192 Missense_Mutation SNP p.C420R Missense 420 +PIK3CA chr3 179210192 179210192 Missense_Mutation SNP p.C420R Missense 420 +PIK3CA chr3 179210272 179210298 In_Frame_Del DEL p.P447_L455del Inframe 447 +PIK3CA chr3 179210272 179210298 In_Frame_Del DEL p.P447_L455del Inframe 447 +PIK3CA chr3 179210272 179210298 In_Frame_Del DEL p.P447_L455del Inframe 447 +PIK3CA chr3 179210279 179210305 In_Frame_Del DEL p.H450_P458del Inframe 450 +PIK3CA chr3 179210284 179210310 In_Frame_Del DEL p.L452_G460del Inframe 452 +PIK3CA chr3 179210291 179210291 Missense_Mutation SNP p.E453K Missense 453 +PIK3CA chr3 179210291 179210291 Missense_Mutation SNP p.E453K Missense 453 +PIK3CA chr3 179210291 179210291 Missense_Mutation SNP p.E453K Missense 453 +PIK3CA chr3 179210291 179210291 Missense_Mutation SNP p.E453K Missense 453 +PIK3CA chr3 179210291 179210291 Missense_Mutation SNP p.E453K Missense 453 +PIK3CA chr3 179210291 179210291 Missense_Mutation SNP p.E453K Missense 453 +PIK3CA chr3 179210291 179210291 Missense_Mutation SNP p.E453K Missense 453 +PIK3CA chr3 179210302 179210302 Silent SNP p.L456L Inframe 456 +PIK3CA chr3 179210431 179210432 Splice_Region INS p.E469delinsDK Truncating 469 +PIK3CA chr3 179218286 179218286 Missense_Mutation SNP p.P539R Missense 539 +PIK3CA chr3 179218293 179218293 Silent SNP p.S541S Inframe 541 +PIK3CA chr3 179218295 179218295 Missense_Mutation SNP p.E542G Missense 542 +PIK3CA chr3 179218295 179218295 Missense_Mutation SNP p.E542G Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218294 179218294 Missense_Mutation SNP p.E542K Missense 542 +PIK3CA chr3 179218304 179218304 Missense_Mutation SNP p.E545A Missense 545 +PIK3CA chr3 179218304 179218304 Missense_Mutation SNP p.E545A Missense 545 +PIK3CA chr3 179218304 179218304 Missense_Mutation SNP p.E545A Missense 545 +PIK3CA chr3 179218304 179218304 Missense_Mutation SNP p.E545A Missense 545 +PIK3CA chr3 179218304 179218304 Missense_Mutation SNP p.E545A Missense 545 +PIK3CA chr3 179218304 179218304 Missense_Mutation SNP p.E545G Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218303 179218303 Missense_Mutation SNP p.E545K Missense 545 +PIK3CA chr3 179218306 179218306 Missense_Mutation SNP p.Q546K Missense 546 +PIK3CA chr3 179218306 179218306 Missense_Mutation SNP p.Q546K Missense 546 +PIK3CA chr3 179218306 179218306 Missense_Mutation SNP p.Q546K Missense 546 +PIK3CA chr3 179218306 179218306 Missense_Mutation SNP p.Q546K Missense 546 +PIK3CA chr3 179218307 179218307 Missense_Mutation SNP p.Q546P Missense 546 +PIK3CA chr3 179218307 179218307 Missense_Mutation SNP p.Q546R Missense 546 +PIK3CA chr3 179218307 179218307 Missense_Mutation SNP p.Q546R Missense 546 +PIK3CA chr3 179218307 179218307 Missense_Mutation SNP p.Q546R Missense 546 +PIK3CA chr3 179218307 179218307 Missense_Mutation SNP p.Q546R Missense 546 +PIK3CA chr3 179218307 179218307 Missense_Mutation SNP p.Q546R Missense 546 +PIK3CA chr3 179218307 179218307 Missense_Mutation SNP p.Q546R Missense 546 +PIK3CA chr3 179219622 179219622 Missense_Mutation SNP p.E600K Missense 600 +PIK3CA chr3 179219631 179219631 Missense_Mutation SNP p.D603H Missense 603 +PIK3CA chr3 179219657 179219657 Silent SNP p.V611V Inframe 611 +PIK3CA chr3 179219664 179219664 Missense_Mutation SNP p.F614I Missense 614 +PIK3CA chr3 179219710 179219710 Missense_Mutation SNP p.S629C Missense 629 +PIK3CA chr3 179220987 179220987 Missense_Mutation SNP p.S673T Missense 673 +PIK3CA chr3 179221147 179221147 Missense_Mutation SNP p.E726G Missense 726 +PIK3CA chr3 179221146 179221146 Missense_Mutation SNP p.E726K Missense 726 +PIK3CA chr3 179221146 179221146 Missense_Mutation SNP p.E726K Missense 726 +PIK3CA chr3 179221146 179221146 Missense_Mutation SNP p.E726K Missense 726 +PIK3CA chr3 179221146 179221146 Missense_Mutation SNP p.E726K Missense 726 +PIK3CA chr3 179221146 179221146 Missense_Mutation SNP p.E726K Missense 726 +PIK3CA chr3 179221146 179221146 Missense_Mutation SNP p.E726K Missense 726 +PIK3CA chr3 179221146 179221146 Missense_Mutation SNP p.E726K Missense 726 +PIK3CA chr3 179221146 179221146 Missense_Mutation SNP p.E726K Missense 726 +PIK3CA chr3 179224158 179224158 Silent SNP p.L755L Inframe 755 +PIK3CA chr3 179224185 179224185 Splice_Region SNP p.L764L Truncating 764 +PIK3CA chr3 179224701 179224701 Missense_Mutation SNP p.L766F Missense 766 +PIK3CA chr3 179230256 179230256 Missense_Mutation SNP p.D939G Missense 939 +PIK3CA chr3 179230256 179230256 Missense_Mutation SNP p.D939G Missense 939 +PIK3CA chr3 179234122 179234122 Missense_Mutation SNP p.L989V Missense 989 +PIK3CA chr3 179234169 179234169 Missense_Mutation SNP p.M1004I Missense 1004 +PIK3CA chr3 179234169 179234169 Missense_Mutation SNP p.M1004I Missense 1004 +PIK3CA chr3 179234169 179234169 Missense_Mutation SNP p.M1004I Missense 1004 +PIK3CA chr3 179234176 179234176 Missense_Mutation SNP p.G1007R Missense 1007 +PIK3CA chr3 179234176 179234176 Missense_Mutation SNP p.G1007R Missense 1007 +PIK3CA chr3 179234219 179234219 Missense_Mutation SNP p.Y1021C Missense 1021 +PIK3CA chr3 179234230 179234230 Missense_Mutation SNP p.T1025A Missense 1025 +PIK3CA chr3 179234266 179234266 Missense_Mutation SNP p.E1037K Missense 1037 +PIK3CA chr3 179234275 179234275 Missense_Mutation SNP p.M1040V Missense 1040 +PIK3CA chr3 179234286 179234286 Missense_Mutation SNP p.M1043I Missense 1043 +PIK3CA chr3 179234286 179234286 Missense_Mutation SNP p.M1043I Missense 1043 +PIK3CA chr3 179234286 179234286 Missense_Mutation SNP p.M1043I Missense 1043 +PIK3CA chr3 179234287 179234287 Missense_Mutation SNP p.N1044Y Missense 1044 +PIK3CA chr3 179234287 179234287 Missense_Mutation SNP p.N1044Y Missense 1044 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047L Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234297 179234297 Missense_Mutation SNP p.H1047R Missense 1047 +PIK3CA chr3 179234296 179234296 Missense_Mutation SNP p.H1047Y Missense 1047 +PIK3CA chr3 179234296 179234296 Missense_Mutation SNP p.H1047Y Missense 1047 +PIK3CA chr3 179234302 179234302 Missense_Mutation SNP p.G1049R Missense 1049 +PIK3CA chr3 179234302 179234302 Missense_Mutation SNP p.G1049R Missense 1049 diff --git a/inst/htmlwidgets/g3Lollipop2.js b/inst/htmlwidgets/g3Lollipop2.js new file mode 100644 index 0000000..1810a99 --- /dev/null +++ b/inst/htmlwidgets/g3Lollipop2.js @@ -0,0 +1,33 @@ +HTMLWidgets.widget({ + name: 'g3Lollipop', + type: 'output', + factory: function (el) { + return { + renderValue: function (x) { + input = x; + domID = el; + + var snvData = x.snvData; + var domainData = x.domainData; + var snvDataFormat = x.snvDataFormat; + var domainDataFormat = x.domainDataFormat; + var plotSettings = x.plotSettings; + + lollipop = g3.Lollipop(el.id); + + lollipop.data.snvData = snvData; + lollipop.data.domainData = domainData; + lollipop.format.snvData = snvDataFormat; + lollipop.format.domainData = domainDataFormat; + lollipop.setOptions(plotSettings); + + lollipop.draw(); + + el.chart = lollipop; + }, + resize: function (width, height) { + // TODO: code to re-render the widget with a new size + }, + }; + } +});