diff --git a/README.md b/README.md index a1b8079..d65f3c7 100644 --- a/README.md +++ b/README.md @@ -18,7 +18,7 @@ devtools::install_github("g3js/g3viz") ## g3Lollipop examples -#### - Example 1 +### Example 1 Retrieve genomic mutation data of [msk\_impact\_2017](https://www.ncbi.nlm.nih.gov/pubmed/28481359) study for the gene _TP53_ from [cBioPortal](http://www.cbioportal.org/). @@ -37,7 +37,7 @@ g3Lollipop(mutation.dat, gene.symbol = "TP53") > > -#### - Example 2 +### Example 2 Load data from local [MAF](https://docs.gdc.cancer.gov/Data/File_Formats/MAF_Format/) file, classified the mutation data by detailed _Variant\_Classification_ information (i.e., _Frame\_Shift\_Del_, _Split\_Site_). In this example, the MAF data was downloaded directly from [TCGA-BRCA](https://portal.gdc.cancer.gov/projects/TCGA-BRCA) project GDC Data Portal. @@ -64,7 +64,7 @@ g3Lollipop(mutation.dat, > > -#### - Example 3 +### Example 3 Load user-defined file in _CSV_ or _TSV_ format.