diff --git a/runners/r-dockerfile b/runners/r-dockerfile index 3ed960b6..50215a7c 100644 --- a/runners/r-dockerfile +++ b/runners/r-dockerfile @@ -12,6 +12,10 @@ RUN sed -e '/[ -z "$PS1" ] && return/s/^/#/g' -i /root/.bashrc RUN mamba env create -f /data/r-environment.yml +# These packages are not in conda-forge +RUN bash --login -c "mamba activate rbase; R -e 'install.packages(c(\"CoordinateCleaner\", \"geodata\", \"OpenStreetMap\"), repos=\"https://mirror.csclub.uwaterloo.ca/CRAN/\")'" + + RUN date +"%Y-%m-%d %R" > /version.txt ###Missing packages coordinatecleaner geodata OpenStreetMap \ No newline at end of file diff --git a/runners/r-environment.yml b/runners/r-environment.yml index 0fc73ca2..40434e81 100644 --- a/runners/r-environment.yml +++ b/runners/r-environment.yml @@ -1,22 +1,32 @@ name: rbase channels: - conda-forge + - r dependencies: - conda-build - gdal + - r-abind - r-base - - r-essentials - - r-rjson - - r-rcurl - - r-rstac - - r-rgbif + - r-curl + - r-devtools - r-dismo + - r-downloader - r-enmeval + - r-essentials + - r-gdalcubes + - r-gdalutilities - r-gdalutils - r-ggsci + - r-jpeg - r-landscapemetrics + - r-png + - r-rcurl + - r-rgbif + - r-rjson - r-rredlist - - r-gdalutilities - - r-gdalcubes + - r-rstac + - r-rstac - r-sf + - r-stars - r-terra + - r-tidyselect