From e38e4a7fcadb10f8623540b48fce756e3ea23ac8 Mon Sep 17 00:00:00 2001
From: michael <mdcatchen@gmail.com>
Date: Wed, 11 Oct 2023 10:02:36 -0400
Subject: [PATCH] fixing deps, but activating project in the wrong place

---
 compose.yml                      | 6 +++---
 runners/julia-dockerfile         | 7 ++++++-
 scripts/helloWorld/helloJulia.jl | 1 +
 3 files changed, 10 insertions(+), 4 deletions(-)

diff --git a/compose.yml b/compose.yml
index 678494f0..525750f4 100755
--- a/compose.yml
+++ b/compose.yml
@@ -54,9 +54,9 @@ services:
   runner-julia:
     container_name: biab-runner-julia
     image: geobon/bon-in-a-box:runner-julia
-    # build:
-    #   context: ./runners
-    #   dockerfile: julia-dockerfile
+    build:
+       context: ./runners
+       dockerfile: julia-dockerfile
     command: sh # Avoids launching julia session that will not be used.
     tty: true # Needed to keep the container alive, waiting for requests.
     volumes:
diff --git a/runners/julia-dockerfile b/runners/julia-dockerfile
index f07769e4..cf95372c 100644
--- a/runners/julia-dockerfile
+++ b/runners/julia-dockerfile
@@ -1,6 +1,11 @@
 FROM julia:1.9.3
 
 # Pre-compiling Julia dependencies
-RUN  julia -e 'pwd(); using Pkg; Pkg.add.(["SpeciesDistributionToolkit", "Dates", "Clustering", "JSON", "CSV", "DataFrames", "StatsBase", "EvoTrees", "MultivariateStats" ]); Pkg.instantiate();'
+# RUN  julia -e 'pwd(); using Pkg; Pkg.add.(["SpeciesDistributionToolkit", "Dates", "Clustering", "JSON", "CSV", "DataFrames", "StatsBase", "EvoTrees", "MultivariateStats" ]); Pkg.instantiate();'
+
+
 
 RUN date +"%Y-%m-%d %R" > /version.txt
+COPY Project.toml /root/Project.toml
+COPY instantiate.jl /root/instantiate.jl
+RUN julia --project=. /root/instantiate.jl
\ No newline at end of file
diff --git a/scripts/helloWorld/helloJulia.jl b/scripts/helloWorld/helloJulia.jl
index 158cb83d..d0039968 100644
--- a/scripts/helloWorld/helloJulia.jl
+++ b/scripts/helloWorld/helloJulia.jl
@@ -1,4 +1,5 @@
 using JSON
+using EvoTrees
 
 println("Hello World")
 outputFolder = ARGS[1]