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Describe the bug Building GEOS (latest "develop" and TPL "master") with CUDA, runs into conflicting definitions for certain templates.
develop
master
To Reproduce Steps to reproduce the behavior:
Expected behavior A clear and concise description of what you expected to happen.
Screenshots If applicable, add screenshots to help explain your problem.
Platform (please complete the following information):
Additional context Output from make all
make all
[ 86%] Building CUDA object coreComponents/physicsSolvers/CMakeFiles/physicsSolvers.dir/wavePropagation/sem/acoustic/secondOrderEqn/anisotropic/AcousticVTIWaveEquationSEM.cpp.o cd /dev/shm/mtml/src/GEOS/GEOS/build-GPU-Hypre-GCC-CUDA_12.6-ompi_hpcx-OMP-relwithdebinfo/coreComponents/physicsSolvers && /vend/nvidia/cuda/v12.6/bin/nvcc -forward-unknown-to-host-compiler -ccbin=/chv/az_ussc_p/x86_64-rhel3/util/hpcx/hpcx-v2.20-gcc-mlnx_ofed-redhat8-cuda12-x86_64/ompi/bin/mpic++ -DCAMP_HAVE_CUDA -DDIY_NO_THREADS -DFMT_HEADER_ONLY=1 -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_MPICC_H -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -DphysicsSolvers_EXPORTS --options-file CMakeFiles/physicsSolvers.dir/includes_CUDA.rsp -restrict -arch sm_80 --expt-extended-lambda --expt-relaxed-constexpr -Werror cross-execution-space-call,reorder,deprecated-declarations -g -lineinfo -restrict -arch sm_80 --expt-extended-lambda --expt-relaxed-constexpr -Werror cross-execution-space-call,reorder,deprecated-declarations -ftz=true -O3 -DNDEBUG -Xcompiler -DNDEBUG -Xcompiler -Ofast -ftz=true -std=c++17 "--generate-code=arch=compute_80,code=[compute_80,sm_80]" -Xcompiler=-fPIC -Xcompiler=-fopenmp -Xcompiler=-pthread -Xcompiler -pthread -MD -MT coreComponents/physicsSolvers/CMakeFiles/physicsSolvers.dir/wavePropagation/sem/acoustic/secondOrderEqn/anisotropic/AcousticVTIWaveEquationSEM.cpp.o -MF CMakeFiles/physicsSolvers.dir/wavePropagation/sem/acoustic/secondOrderEqn/anisotropic/AcousticVTIWaveEquationSEM.cpp.o.d -x cu -rdc=true -c /dev/shm/mtml/src/GEOS/GEOS/src/coreComponents/physicsSolvers/wavePropagation/sem/acoustic/secondOrderEqn/anisotropic/AcousticVTIWaveEquationSEM.cpp -o CMakeFiles/physicsSolvers.dir/wavePropagation/sem/acoustic/secondOrderEqn/anisotropic/AcousticVTIWaveEquationSEM.cpp.o [ 86%] Building CUDA object coreComponents/physicsSolvers/CMakeFiles/physicsSolvers.dir/wavePropagation/sem/acoustoelastic/secondOrderEqn/isotropic/AcousticElasticWaveEquationSEM.cpp.o cd /dev/shm/mtml/src/GEOS/GEOS/build-GPU-Hypre-GCC-CUDA_12.6-ompi_hpcx-OMP-relwithdebinfo/coreComponents/physicsSolvers && /vend/nvidia/cuda/v12.6/bin/nvcc -forward-unknown-to-host-compiler -ccbin=/chv/az_ussc_p/x86_64-rhel3/util/hpcx/hpcx-v2.20-gcc-mlnx_ofed-redhat8-cuda12-x86_64/ompi/bin/mpic++ -DCAMP_HAVE_CUDA -DDIY_NO_THREADS -DFMT_HEADER_ONLY=1 -DH5_BUILT_AS_DYNAMIC_LIB -DMPICH_SKIP_MPICXX -DMPI_NO_CPPBIND -DOMPI_SKIP_MPICXX -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_MPICC_H -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -DphysicsSolvers_EXPORTS --options-file CMakeFiles/physicsSolvers.dir/includes_CUDA.rsp -restrict -arch sm_80 --expt-extended-lambda --expt-relaxed-constexpr -Werror cross-execution-space-call,reorder,deprecated-declarations -g -lineinfo -restrict -arch sm_80 --expt-extended-lambda --expt-relaxed-constexpr -Werror cross-execution-space-call,reorder,deprecated-declarations -ftz=true -O3 -DNDEBUG -Xcompiler -DNDEBUG -Xcompiler -Ofast -ftz=true -std=c++17 "--generate-code=arch=compute_80,code=[compute_80,sm_80]" -Xcompiler=-fPIC -Xcompiler=-fopenmp -Xcompiler=-pthread -Xcompiler -pthread -MD -MT coreComponents/physicsSolvers/CMakeFiles/physicsSolvers.dir/wavePropagation/sem/acoustoelastic/secondOrderEqn/isotropic/AcousticElasticWaveEquationSEM.cpp.o -MF CMakeFiles/physicsSolvers.dir/wavePropagation/sem/acoustoelastic/secondOrderEqn/isotropic/AcousticElasticWaveEquationSEM.cpp.o.d -x cu -rdc=true -c /dev/shm/mtml/src/GEOS/GEOS/src/coreComponents/physicsSolvers/wavePropagation/sem/acoustoelastic/secondOrderEqn/isotropic/AcousticElasticWaveEquationSEM.cpp -o CMakeFiles/physicsSolvers.dir/wavePropagation/sem/acoustoelastic/secondOrderEqn/isotropic/AcousticElasticWaveEquationSEM.cpp.o [ 86%] Linking CUDA device code CMakeFiles/physicsSolvers.dir/cmake_device_link.o cd /dev/shm/mtml/src/GEOS/GEOS/build-GPU-Hypre-GCC-CUDA_12.6-ompi_hpcx-OMP-relwithdebinfo/coreComponents/physicsSolvers && /data/saet/mtml/software/x86_64/cmake-3.28.3-linux-x86_64/bin/cmake -E cmake_link_script CMakeFiles/physicsSolvers.dir/dlink.txt --verbose=1 /vend/nvidia/cuda/v12.6/bin/nvcc -forward-unknown-to-host-compiler -ccbin=/chv/az_ussc_p/x86_64-rhel3/util/hpcx/hpcx-v2.20-gcc-mlnx_ofed-redhat8-cuda12-x86_64/ompi/bin/mpic++ -restrict -arch sm_80 --expt-extended-lambda --expt-relaxed-constexpr -Werror cross-execution-space-call,reorder,deprecated-declarations -g -lineinfo -restrict -arch sm_80 --expt-extended-lambda --expt-relaxed-constexpr -Werror cross-execution-space-call,reorder,deprecated-declarations -ftz=true -O3 -DNDEBUG -Xcompiler -DNDEBUG -Xcompiler -Ofast -ftz=true "--generate-code=arch=compute_80,code=[compute_80,sm_80]" -Xcompiler=-fopenmp -Xcompiler=-L/vend/nvidia/cuda/v12.6/lib64 -Xlinker=-rpath -Xlinker=/chv/az_ussc_p/x86_64-rhel3/util/hpcx/hpcx-v2.20-gcc-mlnx_ofed-redhat8-cuda12-x86_64/ompi/lib -Xlinker=--enable-new-dtags -Xcompiler=-pthread -Xcompiler=-fPIC -Wno-deprecated-gpu-targets -shared -dlink --options-file CMakeFiles/physicsSolvers.dir/deviceObjects1.rsp --options-file CMakeFiles/physicsSolvers.dir/deviceObjects2.rsp -o CMakeFiles/physicsSolvers.dir/cmake_device_link.o --options-file CMakeFiles/physicsSolvers.dir/deviceLinkLibs.rsp nvlink error : Size doesn't match for '_ZN4geos13finiteElement17FiniteElementBaseC1ERKS1_$824' in 'CMakeFiles/physicsSolvers.dir/__/__/generatedSrc/coreComponents/physicsSolvers/multiphysics/poromechanicsKernels/PoromechanicsKernels_CellElementSubRegion_PorousSolid-DelftEgg-_H1_Hexahedron_Lagrange1_GaussLegendre2.cpp.o', first specified in 'CMakeFiles/physicsSolvers.dir/__/__/generatedSrc/coreComponents/physicsSolvers/multiphysics/poromechanicsKernels/PoromechanicsKernels_CellElementSubRegion_PorousSolid-DruckerPragerExtended-_H1_Hexahedron_Lagrange1_GaussLegendre2.cpp.o' (target: sm_80) nvlink fatal : merge_elf failed (target: sm_80) make[2]: *** [coreComponents/physicsSolvers/CMakeFiles/physicsSolvers.dir/build.make:13103: coreComponents/physicsSolvers/CMakeFiles/physicsSolvers.dir/cmake_device_link.o] Error 1 make[2]: Target 'coreComponents/physicsSolvers/CMakeFiles/physicsSolvers.dir/build' not remade because of errors. make[2]: Leaving directory '/dev/shm/mtml/src/GEOS/GEOS/build-GPU-Hypre-GCC-CUDA_12.6-ompi_hpcx-OMP-relwithdebinfo' make[1]: *** [CMakeFiles/Makefile2:8964: coreComponents/physicsSolvers/CMakeFiles/physicsSolvers.dir/all] Error 2 make[1]: Target 'all' not remade because of errors. make[1]: Leaving directory '/dev/shm/mtml/src/GEOS/GEOS/build-GPU-Hypre-GCC-CUDA_12.6-ompi_hpcx-OMP-relwithdebinfo' make: *** [Makefile:146: all] Error 2
[Make-build-2024-12-17-103544.log](https://github.com/user-attachments/files/18171272/Make-build-2024-12-17-103544.log) [PoromechanicsKernels_CellElementSubRegion_PorousSolid-DruckerPragerExtended-_H1_Hexahedron_Lagrange1_GaussLegendre2.cpp.txt](https://github.com/user-attachments/files/18171302/PoromechanicsKernels_CellElementSubRegion_PorousSolid-DruckerPragerExtended-_H1_Hexahedron_Lagrange1_GaussLegendre2.cpp.txt) [ThermoPoromechanicsKernels_CellElementSubRegion_PorousSolid-DelftEgg-_H1_Hexahedron_Lagrange1_GaussLegendre2.cpp.txt](https://github.com/user-attachments/files/18171303/ThermoPoromechanicsKernels_CellElementSubRegion_PorousSolid-DelftEgg-_H1_Hexahedron_Lagrange1_GaussLegendre2.cpp.txt)
The text was updated successfully, but these errors were encountered:
No branches or pull requests
Describe the bug
Building GEOS (latest "
develop
" and TPL "master
") with CUDA, runs into conflicting definitions for certain templates.To Reproduce
Steps to reproduce the behavior:
Try to provide minimal test cases where possible to help isolate the problem.
Expected behavior
A clear and concise description of what you expected to happen.
Screenshots
If applicable, add screenshots to help explain your problem.
Platform (please complete the following information):
Additional context
Output from
make all
The text was updated successfully, but these errors were encountered: