Merge branch 'develop' into bugfix/wjiang/rhod_table

GEOS-ESM · Aug 12, 2024 · 907cb8a · 907cb8a
2 parents 7fabc21 + f3a0e9b
commit 907cb8a
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diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -1,11 +1,11 @@
 version: 2.1
 
-# Anchors to prevent forgetting to update a version
-baselibs_version: &baselibs_version v7.7.0
-bcs_version: &bcs_version v11.00.0
+# Anchors in case we need to override the defaults from the orb
+#baselibs_version: &baselibs_version v7.17.0
+#bcs_version: &bcs_version v11.3.0
 
 orbs:
-  ci: geos-esm/circleci-tools@1
+  ci: geos-esm/circleci-tools@2
 
 workflows:
   build-and-test:
@@ -18,7 +18,7 @@ workflows:
           matrix:
             parameters:
               compiler: [gfortran, ifort]
-          baselibs_version: *baselibs_version
+          #baselibs_version: *baselibs_version
           repo: GOCART
           buildtarget: GOCART2G_GridComp
           mepodevelop: true
@@ -32,7 +32,7 @@ workflows:
           matrix:
             parameters:
               compiler: [gfortran, ifort]
-          baselibs_version: *baselibs_version
+          #baselibs_version: *baselibs_version
           repo: GOCART
           buildtarget: GOCART2G_GridComp
           mepodevelop: true
@@ -47,7 +47,7 @@ workflows:
           matrix:
             parameters:
               compiler: [gfortran, ifort]
-          baselibs_version: *baselibs_version
+          #baselibs_version: *baselibs_version
           repo: GEOSgcm
           checkout_fixture: true
           mepodevelop: true

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,11 +5,17 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [Unreleased]
+
+## [Unreleased] - 2023-07-24
+
 
 ### Fixed
 
+
 - corrected reading variable 'rhod' from files ( it was mispelled as 'rhop')
+
+- Silenced unwarranted error messages from wavelength/channel retrieval functions occurring when 470nm and/or 870nm channels are not included in GOCART resource file.
+
 - Add explicit `find_package()` calls for missing dependencies for MAPL for builds with spack-stack. Will eventually be fixed in MAPL in later versions
 - Corrected the units of the gravimetric soil moisture to percent instead of fractional in the FENGSHA dust scheme.
 
@@ -19,10 +25,23 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Changed
 
+- State Spec RC files for GOCART2G, CA, DU, NI, SU, and SS were updated such that the long names for AOD are more intuitive
+
+- Modified ExtData.yaml files to persist as climatological anthropogenic emissions after the end of the CEDS dataset in 2019. Analogous rc files removed as this capability is only available with ExtData2G
+
+- Update `components.yaml` to match that of GEOSgcm v11.3.3
+  - ESMA_env v4.20.6 (Baselibs 7.14.0, Updates for SLES15 at NCCS)
+  - ESMA_cmake v3.36.0 (Fixes for NAS, debug flags, Updates for SLES15 at NCCS)
+  - GMAO_Shared v1.9.6 (Bug fix for MITgcm, CI fixes, SLES15 Updates)
+  - MAPL 2.42.0 (Various fixes and features)
+- Update CI to use Baselibs by default from CircleCI Orb
 - Correct soil moisture parameterization in FENGSHA
 - Add `soil_moisture_factor` to the DU2G_instance_DU.rc (same name used in the K14 scheme) and DU2G_GridCompMod.F90 files for FENGSHA
 - Add `soil_drylimit_factor` to the DU2G_instance_DU.rc and DU2G_GridCompMod.F90 files for FENGSHA
 
+- Moved process library macros to header file.
+
+
 ## [v2.2.1] - 2023-05-30
 
 ### Fixed

diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -4,7 +4,7 @@ cmake_policy (SET CMP0054 NEW)
 
 project (
         GOCART
-        VERSION 2.1.1
+        VERSION 2.2.1
         LANGUAGES Fortran CXX C)  # Note - CXX is required for ESMF
 
 if ("${PROJECT_SOURCE_DIR}" STREQUAL "${PROJECT_BINARY_DIR}")

diff --git a/ESMF/GOCART2G_GridComp/CA2G_GridComp/AMIP/CA2G_GridComp_ExtData.rc b/ESMF/GOCART2G_GridComp/CA2G_GridComp/AMIP/CA2G_GridComp_ExtData.rc
diff --git a/ESMF/GOCART2G_GridComp/CA2G_GridComp/AMIP/CA2G_GridComp_ExtData.yaml b/ESMF/GOCART2G_GridComp/CA2G_GridComp/AMIP/CA2G_GridComp_ExtData.yaml
@@ -1,20 +1,28 @@
 Collections:
   CA2G_BC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4:
     template: ExtData/chemistry/CEDS/v2021-04-21/L72/BC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4
+    valid_range: "1979-01-15T12:00/2019-12-15T12:00"
   CA2G_BC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4:
     template: ExtData/chemistry/CEDS/v2021-04-21/sfc/BC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4
+    valid_range: "1979-01-15T12:00/2019-12-15T12:00"
   CA2G_BC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4:
     template: ExtData/chemistry/CEDS/v2021-04-21/sfc/BC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4
+    valid_range: "1979-01-15T12:00/2019-12-15T12:00"
   CA2G_BC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4:
     template: ExtData/chemistry/CEDS/v2021-04-21/sfc/BC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4
+    valid_range: "1979-01-15T12:00/2019-12-15T12:00"
   CA2G_OC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4:
     template: ExtData/chemistry/CEDS/v2021-04-21/L72/OC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4
+    valid_range: "1979-01-15T12:00/2019-12-15T12:00"
   CA2G_OC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4:
     template: ExtData/chemistry/CEDS/v2021-04-21/sfc/OC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4
+    valid_range: "1979-01-15T12:00/2019-12-15T12:00"
   CA2G_OC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4:
     template: ExtData/chemistry/CEDS/v2021-04-21/sfc/OC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4
+    valid_range: "1979-01-15T12:00/2019-12-15T12:00"
   CA2G_OC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4:
     template: ExtData/chemistry/CEDS/v2021-04-21/sfc/OC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4
+    valid_range: "1979-01-15T12:00/2019-12-15T12:00"
   CA2G_merra2.aer_Nv.2003-2015.2008%m2clm.nc4:
     template: ExtData/chemistry/MERRA2/v0.0.0/L72/merra2.aer_Nv.2003-2015.2008%m2clm.nc4
     valid_range: "2008-01-01T12:00:00/2008-12-15T12:00:00"
@@ -43,23 +51,23 @@ Samplings:
     update_frequency: PT24H
     update_offset: PT12H
     update_reference_time: '0'
+  CA2G_sample_3:
+    extrapolation: clim
+    update_frequency: PT24H
+    update_offset: PT12H
+    update_reference_time: '0'
+    source_time: "2019-01-15T12:00/2019-12-15T00:00:00"
 
 Exports:
   BC_AIRCRAFT:
-    collection: CA2G_BC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4
-    regrid: CONSERVE
-    sample: CA2G_sample_1
-    variable: bc_aviation
+    - {starting: "1979-01-15T12:00", collection: CA2G_BC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4, sample: CA2G_sample_1, regrid: CONSERVE, variable: bc_aviation}
+    - {starting: "2019-12-15T12:00", collection: CA2G_BC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4, regrid: CONSERVE, sample: CA2G_sample_3, variable: bc_aviation}
   BC_ANTEBC1:
-    collection: CA2G_BC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4
-    regrid: CONSERVE
-    sample: CA2G_sample_1
-    variable: bc_nonenergy
+    - {starting: "1979-01-15T12:00", collection: CA2G_BC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4, sample: CA2G_sample_1, regrid: CONSERVE, variable: bc_nonenergy}
+    - {starting: "2019-12-15T12:00", collection: CA2G_BC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4, regrid: CONSERVE, sample: CA2G_sample_3, variable: bc_nonenergy}
   BC_ANTEBC2:
-    collection: CA2G_BC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4
-    regrid: CONSERVE
-    sample: CA2G_sample_1
-    variable: bc_energy
+    - {starting: "1979-01-15T12:00", collection: CA2G_BC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4, sample: CA2G_sample_1, regrid: CONSERVE, variable: bc_energy}
+    - {starting: "2019-12-15T12:00", collection: CA2G_BC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4, regrid: CONSERVE, sample: CA2G_sample_3, variable: bc_energy}
   BC_AVIATION_CDS:
     collection: /dev/null
     regrid: CONSERVE
@@ -84,10 +92,8 @@ Exports:
     - {starting: "1960-01-16T12:00", collection: CA2G_hfed.emis_bc.x576_y361.%y4%m2.nc4, linear_transformation: [0.0, 0.778], regrid: CONSERVE, sample: CA2G_sample_1, variable: biomass}
     - {starting: "2000-03-01T00:00", collection: CA2G_qfed2.emis_bc.061.%y4%m2%d2.nc4, linear_transformation: [0.0, 0.778], regrid: CONSERVE, sample: CA2G_sample_1, variable: biomass}
   BC_SHIP:
-    collection: CA2G_BC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4
-    regrid: CONSERVE
-    sample: CA2G_sample_1
-    variable: bc_shipping
+    - {starting: "1979-01-15T12:00", collection: CA2G_BC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4, sample: CA2G_sample_1, regrid: CONSERVE, variable: bc_shipping}
+    - {starting: "2019-12-15T12:00", collection: CA2G_BC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4, regrid: CONSERVE, sample: CA2G_sample_3, variable: bc_shipping}
   BRC_AIRCRAFT:
     collection: /dev/null
     regrid: CONSERVE
@@ -137,20 +143,14 @@ Exports:
     sample: CA2G_sample_2
     variable: terpene
   OC_AIRCRAFT:
-    collection: CA2G_OC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4
-    regrid: CONSERVE
-    sample: CA2G_sample_1
-    variable: oc_aviation
+    - {starting: "1979-01-15T12:00", collection: CA2G_OC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4, sample: CA2G_sample_1, regrid: CONSERVE, variable: oc_aviation}
+    - {starting: "2019-12-15T12:00", collection: CA2G_OC-em-AIR-anthro_input4MIPs_emissions_CMIP_CEDS-2021-04-21_gn__aviation.x576_y361_z72_t12.%y4.nc4, regrid: CONSERVE, sample: CA2G_sample_3, variable: oc_aviation}
   OC_ANTEOC1:
-    collection: CA2G_OC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4
-    regrid: CONSERVE
-    sample: CA2G_sample_1
-    variable: oc_nonenergy
+    - {starting: "1979-01-15T12:00", collection: CA2G_OC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4, sample: CA2G_sample_1, regrid: CONSERVE, variable: oc_nonenergy}
+    - {starting: "2019-12-15T12:00", collection: CA2G_OC-em-anthro_CMIP_CEDS_gn_nonenergy.x2304_y1441_t12.%y4.nc4, regrid: CONSERVE, sample: CA2G_sample_3, variable: oc_nonenergy}
   OC_ANTEOC2:
-    collection: CA2G_OC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4
-    regrid: CONSERVE
-    sample: CA2G_sample_1
-    variable: oc_energy
+    - {starting: "1979-01-15T12:00", collection: CA2G_OC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4, sample: CA2G_sample_1, regrid: CONSERVE, variable: oc_energy}
+    - {starting: "2019-12-15T12:00", collection: CA2G_OC-em-anthro_CMIP_CEDS_gn_energy.x2304_y1441_t12.%y4.nc4, regrid: CONSERVE, sample: CA2G_sample_3, variable: oc_energy}
   OC_AVIATION_CDS:
     collection: /dev/null
     regrid: CONSERVE
@@ -180,10 +180,8 @@ Exports:
     sample: CA2G_sample_1
     variable: biomass
   OC_SHIP:
-    collection: CA2G_OC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4
-    regrid: CONSERVE
-    sample: CA2G_sample_1
-    variable: oc_shipping
+    - {starting: "1979-01-15T12:00", collection: CA2G_OC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4, sample: CA2G_sample_1, regrid: CONSERVE, variable: oc_shipping}
+    - {starting: "2019-12-15T12:00", collection: CA2G_OC-em-anthro_CMIP_CEDS_gn_shipping.x2304_y1441_t12.%y4.nc4, regrid: CONSERVE, sample: CA2G_sample_3, variable: oc_shipping}
   climBCDP001:
     collection: /dev/null
   climBCDP002: