Remove stat #131
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Remove stat #131
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an alternative is making these checks "optional" so they are applied if the stat result is available so you get some partial safety from this |
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Revisited this PR to fetch files from external buckets we don't necessarily have control of e.g. this file https://ont-open-data.s3.amazonaws.com/colo829_2024.03/wf_somatic_variation/sup/COLO829_tumor.ht.cram which is from the ONT bucket. the bucket has CORS enabled, but not CORS for Content-Range header access. this makes it fail when trying to get the stat() for "file length" This PR removes the file length checks it passes all tests except 1 currently |
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This removes checks for "file out of bounds" to cram-js
While the code is a bit "safer" perhaps with these checks, they require that "stat" works which requires specialized CORS headers to be set. Access to files for example https://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/HGDP/data/Sindhi/HGDP00171/alignment/HGDP00171.alt_bwamem_GRCh38DH.20181023.Sindhi.cram work with this PR enabled, but not without this PR
Draft PR because tests may be non-passing, but tested in the genome browser