Added .DEB build to cmake.

.Description

@@ -0,0 +1,9 @@
+A model of the electromotor command network and a genetic algorithm
+to fit neural network models to temporal output patterns.
+It is written in an object oriented fashion with heavily templated C++.
+
+To build it, just type:
+> mkdir bin
+> cd bin
+> cmake ..
+> make

CMakeLists.txt

@@ -1,5 +1,5 @@
 cmake_minimum_required(VERSION 2.8)
-project(efish-nmodel CXX)
+project(electromotor-nmodel CXX)
 
 set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}/cmake.modules/")
 
@@ -32,22 +32,28 @@ add_custom_target(GA COMMAND make lib
 			   )
 add_subdirectory(thirdparty/Neun)
 add_subdirectory(thirdparty/libStats)
+add_subdirectory(include)
 add_subdirectory(src)
 
 SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "Modeling the variability of the electromotor command system of pulse mormyrids.")
 SET(CPACK_PACKAGE_VENDOR "Lareo, A., Varona P. and Rodriguez, FB.")
 set(CPACK_PACKAGE_CONTACT "[email protected]")
-SET(CPACK_PACKAGE_DESCRIPTION_FILE "Readme.md")
+SET(CPACK_PACKAGE_DESCRIPTION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/.Description")
 SET(CPACK_PACKAGE_VERSION_MAJOR ${CMake_VERSION_MAJOR})
 SET(CPACK_PACKAGE_VERSION_MINOR ${CMake_VERSION_MINOR})
 SET(CPACK_PACKAGE_VERSION_PATCH ${CMake_VERSION_PATCH})
 SET(CPACK_PACKAGE_INSTALL_DIRECTORY "CMake ${CMake_VERSION_MAJOR}.${CMake_VERSION_MINOR}")
 
-#SET(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-program-options1.40.0")
-#set(CPACK_DEBIAN_PACKAGE_SECTION "science")
-#set(CPACK_GENERATOR "DEB")
+SET(CPACK_DEBIAN_PACKAGE_MAINTAINER "A. Lareo")
+SET(CPACK_DEBIAN_PACKAGE_DEPENDS "libboost-dev (>= 1.45)")
+SET(CPACK_DEBIAN_PACKAGE_DEPENDS "libyaml-cpp-dev (>= 0.6.2)")
+SET(CPACK_DEBIAN_PACKAGE_DEPENDS "libhdf5-dev (>= 1.10.4)")
+SET(CPACK_DEBIAN_PACKAGE_DEPENDS "libhdf5-cpp-103 (>= 1.10.4)")
+SET(CPACK_DEBIAN_PACKAGE_SECTION "science")
+SET(CPACK_GENERATOR "DEB")
 
-#include(CPack)
 
-#configure_file(neun.pc.in neun.pc @ONLY)
-#install(FILES neun.pc DESTINATION pkgconfig)
+include(CPack)
+
+configure_file(electromotor-nmodel.pc.in ${CMAKE_SOURCE_DIR}/electromotor-nmodel.pc @ONLY)
+install(FILES electromotor-nmodel.pc DESTINATION pkgconfig)

electromotor-nmodel.pc

@@ -0,0 +1,10 @@
+prefix=/usr/local/electromotor-nmodel/0.1.0
+exec_prefix=${prefix}
+includedir=${prefix}
+
+Name: neun
+Description: Modeling the variability of the electromotor command system of pulse mormyrids.
+Requires:
+Version: 0.1.0
+Libs: 
+Cflags: -I${includedir}

electromotor-nmodel.pc.in

@@ -0,0 +1,10 @@
+prefix=@CMAKE_INSTALL_PREFIX@/@PROJECT_NAME@/@PROJECT_VERSION@
+exec_prefix=${prefix}
+includedir=${prefix}
+
+Name: neun
+Description: @CPACK_PACKAGE_DESCRIPTION_SUMMARY@
+Requires:
+Version: @PROJECT_VERSION@
+Libs: 
+Cflags: -I${includedir}

include/CMakeLists.txt

@@ -0,0 +1,2 @@
+# install(FILES *.h
+#        DESTINATION ${PROJECT_NAME}/${PROJECT_VERSION}/include)

scripts/run-GA.sh

@@ -9,7 +9,7 @@ outputDir="$vDir/ga-results/${startConfigName}_${run}"
 mkdir ${outputDir}
 
 GAParameters="G800_N150_P90"
-${vDir}/bin/emmodelGAfit -i ${configFile} -g 800 -n 150 -p 90 \
+${vDir}/bin/emmodelGAFit -i ${configFile} -g 800 -n 150 -p 90 \
         -s "${outputDir}/${startConfigName}_${run}_${GAParameters}.stats" \
         -o "${outputDir}/${startConfigName}_${run}_${GAParameters}.dat"
 

src/CMakeLists.txt

@@ -7,8 +7,22 @@ set ( EXECUTABLE_OUTPUT_PATH  ${CMAKE_SOURCE_DIR}/bin)
 add_executable(emmodel emmodel.cpp)
 target_link_libraries(emmodel ${YAMLCPP_LIBRARY})
 
+install(TARGETS emmodel
+    RUNTIME DESTINATION "/usr/bin"
+    LIBRARY DESTINATION "/usr/lib"
+    PUBLIC_HEADER DESTINATION "/usr/include"
+    DESTINATION "/usr/share"
+)
+
 link_libraries("-static")
-add_executable(emmodelGAfit emmodelGAFit.cpp)
-add_dependencies(emmodelGAfit GA)
-set_target_properties(emmodelGAfit PROPERTIES LINK_FLAGS "-static" )
-target_link_libraries(emmodelGAfit ${YAMLCPP_LIBRARY} ${CMAKE_SOURCE_DIR}/thirdparty/GA/ga/libga.a)
+add_executable(emmodelGAFit emmodelGAFit.cpp)
+add_dependencies(emmodelGAFit GA)
+set_target_properties(emmodelGAFit PROPERTIES LINK_FLAGS "-static" )
+target_link_libraries(emmodelGAFit ${YAMLCPP_LIBRARY} ${CMAKE_SOURCE_DIR}/thirdparty/GA/ga/libga.a)
+
+install(TARGETS emmodelGAFit
+    RUNTIME DESTINATION "/usr/bin"
+    LIBRARY DESTINATION "/usr/lib"
+    PUBLIC_HEADER DESTINATION "/usr/include"
+    DESTINATION "/usr/share"
+)