The script won't work unless fasta paths are absolute

[foriin]

Hi and thanks for developing sRNAPipe. I'm trying to run it on the test data from the Galaxy version repo and I would find it more convenient if you had written in the manual that the user has to provide the full paths to all fasta files. Otherwise, symlinks generated by align.pm script don't work :) Theoretically, the script could infer those paths by itself, but I don't know Perl, so I can't modify the code by myself.

Cheers,
Artem