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so I'm going to go with pandoc+CSL, since this looks nice and is very flexible. It requires the bibliography must be in a format pandoc accepts:
file type
extension
BibLaTeX
.bib
BibTeX
.bibtex
Copac
.copac
CSL JSON
.json
CSL YAML
.yaml
EndNote
.enl
EndNote XML
.xml
ISI
.wos
MEDLINE
.medline
MODS
.mods
RIS
.ris
I use the Papers app, which makes it really easy to export a .bib file of my whole reference library every once and a while.
Here what the final product looks like, with working links to the Pubmed repositroy (if available), and a link to article on the publishers site via doi.org.
still todo:
the current format will need to be tweaked, since over 100 references and the numbers will collide with the references themselves
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