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Deprecate tsv fasta #640

Merged
merged 3 commits into from
Nov 14, 2024
Merged

Deprecate tsv fasta #640

merged 3 commits into from
Nov 14, 2024

Commits on Nov 14, 2024

  1. feat!: remove tsv/fasta/sam input format (#562) 

    It is now impossible to specify an input file different from ndjsonInputFilename. An error will be thrown if this variable is not set.

resolves #562

BREAKING CHANGE: `metadataInputFile` key in preprocessing config file has been removed. Instead, ndjson files should be used and specified with the `ndjsonInputFilename` option
    @Taepper
    Taepper committed Nov 14, 2024
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  2. refactor: minor fixes

    @Taepper
    Taepper committed Nov 14, 2024
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  3. chore: update build configuration of new CLion version

    @Taepper
    Taepper committed Nov 14, 2024
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