Merge pull request #1 from Genentech/github-actions

GitHub actions to test and publish

.github/workflows/pypi-publish.yml

@@ -0,0 +1,52 @@
+# This workflow will install Python dependencies, run tests and lint with a single version of Python
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Publish to PyPI
+
+on:
+  push:
+    tags: "*"
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python 3.9
+      uses: actions/setup-python@v2
+      with:
+        python-version: 3.9
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install flake8 pytest tox
+    # - name: Lint with flake8
+    #   run: |
+    #     # stop the build if there are Python syntax errors or undefined names
+    #     flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+    #     # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+    #     # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with tox
+      run: |
+        tox
+    - name: Build docs
+      run: |
+        tox -e docs
+    - run: touch ./docs/_build/html/.nojekyll
+    - name: GH Pages Deployment
+      uses: JamesIves/[email protected]
+      with:
+        branch: gh-pages # The branch the action should deploy to.
+        folder: ./docs/_build/html
+        clean: true # Automatically remove deleted files from the deploy branch
+    - name: Build Project and Publish
+      run: |
+        python -m tox -e clean,build
+    # UNCOMMENT LATER TO PUBLISH TO PYPI
+    # - name: Publish package
+    #   uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
+    #   with:
+    #     user: __token__
+    #     password: ${{ secrets.PYPI_PASSWORD }}

.github/workflows/pypi-test.yml

@@ -0,0 +1,41 @@
+# This workflow will install Python dependencies, run tests and lint with a single version of Python
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Test the library
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ '3.10' ]
+        # '3.8', '3.9', '3.11', '3.12'
+
+    name: Python ${{ matrix.python-version }}
+    steps:
+    - uses: actions/checkout@v2
+    - name: Setup Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+        cache: 'pip'
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install flake8 pytest tox
+    # - name: Lint with flake8
+    #   run: |
+    #     # stop the build if there are Python syntax errors or undefined names
+    #     flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+    #     # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+    #     # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with tox
+      run: |
+        tox