From f7e57f88f8c025706f7b367f91ed42569aa58eba Mon Sep 17 00:00:00 2001 From: Bruno Pacheco Date: Wed, 13 Dec 2023 14:12:47 +0100 Subject: [PATCH] Initial commit --- .github/workflows/aggregated_report.yml | 21 +++++++ .github/workflows/report_per_repo.yml | 61 +++++++++++++++++++++ .gitmodules | 55 +++++++++++++++++++ README.md | 2 + repos/beacon-v2 | 1 + repos/beacon2-ri-api | 1 + repos/gdi-userportal-apigateway | 1 + repos/gdi-userportal-ckan-docker | 1 + repos/gdi-userportal-ckanext-dcat | 1 + repos/gdi-userportal-ckanext-gdi-userportal | 1 + repos/gdi-userportal-ckanext-harvest | 1 + repos/gdi-userportal-ckanext-scheming | 1 + repos/gdi-userportal-docs | 1 + repos/gdi-userportal-frontend | 1 + repos/rems | 1 + repos/starter-kit-containerized-computation | 1 + repos/starter-kit-htsget | 1 + repos/starter-kit-lsaai | 1 + repos/starter-kit-lsaai-mock | 1 + repos/starter-kit-rems.git | 1 + repos/starter-kit-storage-and-interfaces | 1 + 21 files changed, 156 insertions(+) create mode 100644 .github/workflows/aggregated_report.yml create mode 100644 .github/workflows/report_per_repo.yml create mode 100644 .gitmodules create mode 100644 README.md create mode 160000 repos/beacon-v2 create mode 160000 repos/beacon2-ri-api create mode 160000 repos/gdi-userportal-apigateway create mode 160000 repos/gdi-userportal-ckan-docker create mode 160000 repos/gdi-userportal-ckanext-dcat create mode 160000 repos/gdi-userportal-ckanext-gdi-userportal create mode 160000 repos/gdi-userportal-ckanext-harvest create mode 160000 repos/gdi-userportal-ckanext-scheming create mode 160000 repos/gdi-userportal-docs create mode 160000 repos/gdi-userportal-frontend create mode 160000 repos/rems create mode 160000 repos/starter-kit-containerized-computation create mode 160000 repos/starter-kit-htsget create mode 160000 repos/starter-kit-lsaai create mode 160000 repos/starter-kit-lsaai-mock create mode 160000 repos/starter-kit-rems.git create mode 160000 repos/starter-kit-storage-and-interfaces diff --git a/.github/workflows/aggregated_report.yml b/.github/workflows/aggregated_report.yml new file mode 100644 index 0000000..e5ab8b4 --- /dev/null +++ b/.github/workflows/aggregated_report.yml @@ -0,0 +1,21 @@ +name: Aggregated Report + +on: + push: + branches: [ "main" ] + +jobs: + ort: + strategy: + fail-fast: false + runs-on: ubuntu-latest + steps: + - name: Use HTTPS instead of SSH for Git cloning + run: git config --global url.https://github.com/.insteadOf ssh://git@github.com/ + - uses: actions/checkout@v3 + with: + submodules: 'true' + - uses: oss-review-toolkit/ort-ci-github-action@b6d71a83acba8619f16b30c008f212a7a572f8e8 #v1 + with: + report-formats: CycloneDx,SpdxDocument,WebApp,PlainTextTemplate,Opossum + run: 'cache-dependencies,cache-scan-results,labels,analyzer,evaluator,advisor,reporter,upload-results' diff --git a/.github/workflows/report_per_repo.yml b/.github/workflows/report_per_repo.yml new file mode 100644 index 0000000..fb77e47 --- /dev/null +++ b/.github/workflows/report_per_repo.yml @@ -0,0 +1,61 @@ +name: Report per Repository + +on: + push: + branches: [ "main" ] + +jobs: + ort: + strategy: + fail-fast: false + matrix: + include: + - repository: GenomicDataInfrastructure/starter-kit-storage-and-interfaces + sw-name: starter-kit-storage-and-interfaces + - repository: GenomicDataInfrastructure/gdi-userportal-ckanext-gdi-userportal + sw-name: gdi-userportal-ckanext-gdi-userportal + - repository: GenomicDataInfrastructure/gdi-userportal-frontend + sw-name: gdi-userportal-frontend + - repository: GenomicDataInfrastructure/gdi-userportal-apigateway + sw-name: gdi-userportal-apigateway + - repository: GenomicDataInfrastructure/gdi-userportal-ckan-docker + sw-name: gdi-userportal-ckan-docker + - repository: GenomicDataInfrastructure/gdi-userportal-ckanext-dcat + sw-name: gdi-userportal-ckanext-dcat + - repository: GenomicDataInfrastructure/gdi-userportal-ckanext-harvest + sw-name: gdi-userportal-ckanext-harvest + - repository: GenomicDataInfrastructure/gdi-userportal-ckanext-scheming + sw-name: gdi-userportal-ckanext-scheming + - repository: GenomicDataInfrastructure/gdi-userportal-docs + sw-name: gdi-userportal-docs + - repository: GenomicDataInfrastructure/starter-kit-beacon2-ri-api + sw-name: starter-kit-beacon2-ri-api + - repository: EGA-archive/beacon2-ri-api + sw-name: beacon2-ri-api + - repository: GenomicDataInfrastructure/starter-kit-rems + sw-name: starter-kit-rems + - repository: CSCfi/rems + sw-name: rems + - repository: GenomicDataInfrastructure/starter-kit-htsget + sw-name: starter-kit-htsget + - repository: GenomicDataInfrastructure/starter-kit-containerized-computation + sw-name: starter-kit-containerized-computation + - repository: GenomicDataInfrastructure/starter-kit-lsaai-mock + sw-name: starter-kit-lsaai-mock + - repository: GenomicDataInfrastructure/starter-kit-lsaai-mock + sw-name: starter-kit-lsaai-mock + - repository: GenomicDataInfrastructure/starter-kit-lsaai + sw-name: starter-kit-lsaai + + runs-on: ubuntu-latest + steps: + - name: Use HTTPS instead of SSH for Git cloning + run: git config --global url.https://github.com/.insteadOf ssh://git@github.com/ + - uses: actions/checkout@v3 + with: + repository: ${{ matrix.repository }} + - uses: oss-review-toolkit/ort-ci-github-action@b6d71a83acba8619f16b30c008f212a7a572f8e8 #v1 + with: + report-formats: CycloneDx,SpdxDocument,WebApp,PlainTextTemplate,Opossum + sw-name: ${{ matrix.sw-name }} + run: 'cache-dependencies,cache-scan-results,labels,analyzer,evaluator,advisor,reporter,upload-results' \ No newline at end of file diff --git a/.gitmodules b/.gitmodules new file mode 100644 index 0000000..10de1a8 --- /dev/null +++ b/.gitmodules @@ -0,0 +1,55 @@ +[submodule "repos/starter-kit-storage-and-interfaces"] + path = repos/starter-kit-storage-and-interfaces + url = git@github.com:GenomicDataInfrastructure/starter-kit-storage-and-interfaces.git +[submodule "repos/gdi-userportal-ckanext-gdi-userportal"] + path = repos/gdi-userportal-ckanext-gdi-userportal + url = git@github.com:GenomicDataInfrastructure/gdi-userportal-ckanext-gdi-userportal.git +[submodule "repos/gdi-userportal-frontend"] + path = repos/gdi-userportal-frontend + url = git@github.com:GenomicDataInfrastructure/gdi-userportal-frontend.git +[submodule "repos/gdi-userportal-apigateway"] + path = repos/gdi-userportal-apigateway + url = git@github.com:GenomicDataInfrastructure/gdi-userportal-apigateway.git +[submodule "repos/gdi-userportal-ckan-docker"] + path = repos/gdi-userportal-ckan-docker + url = git@github.com:GenomicDataInfrastructure/gdi-userportal-ckan-docker.git + branch = user-portal-main +[submodule "repos/gdi-userportal-ckanext-dcat"] + path = repos/gdi-userportal-ckanext-dcat + url = git@github.com:GenomicDataInfrastructure/gdi-userportal-ckanext-dcat.git + branch = user-portal-v1.5.1 +[submodule "repos/gdi-userportal-ckanext-harvest"] + path = repos/gdi-userportal-ckanext-harvest + url = git@github.com:GenomicDataInfrastructure/gdi-userportal-ckanext-harvest.git + branch = user-portal-v1.5.6 +[submodule "repos/gdi-userportal-ckanext-scheming"] + path = repos/gdi-userportal-ckanext-scheming + url = git@github.com:GenomicDataInfrastructure/gdi-userportal-ckanext-scheming.git + branch = user-portal-v3.0.0 +[submodule "repos/gdi-userportal-docs"] + path = repos/gdi-userportal-docs + url = git@github.com:GenomicDataInfrastructure/gdi-userportal-docs.git +[submodule "repos/beacon-v2"] + path = repos/beacon-v2 + url = git@github.com:GenomicDataInfrastructure/starter-kit-beacon2-ri-api.git +[submodule "repos/beacon2-ri-api"] + path = repos/beacon2-ri-api + url = git@github.com:EGA-archive/beacon2-ri-api.git +[submodule "repos/rems"] + path = repos/rems + url = git@github.com:CSCfi/rems.git +[submodule "repos/starter-kit-rems.git"] + path = repos/starter-kit-rems.git + url = git@github.com:GenomicDataInfrastructure/starter-kit-rems.git +[submodule "repos/starter-kit-htsget"] + path = repos/starter-kit-htsget + url = git@github.com:GenomicDataInfrastructure/starter-kit-htsget.git +[submodule "repos/starter-kit-containerized-computation"] + path = repos/starter-kit-containerized-computation + url = git@github.com:GenomicDataInfrastructure/starter-kit-containerized-computation.git +[submodule "repos/starter-kit-lsaai-mock"] + path = repos/starter-kit-lsaai-mock + url = git@github.com:GenomicDataInfrastructure/starter-kit-lsaai-mock.git +[submodule "repos/starter-kit-lsaai"] + path = repos/starter-kit-lsaai + url = git@github.com:GenomicDataInfrastructure/starter-kit-lsaai.git diff --git a/README.md b/README.md new file mode 100644 index 0000000..ff4d402 --- /dev/null +++ b/README.md @@ -0,0 +1,2 @@ +# gdi-userportal-ort +OSS Review Toolkit for GDI User Portal. diff --git a/repos/beacon-v2 b/repos/beacon-v2 new file mode 160000 index 0000000..933a12c --- /dev/null +++ b/repos/beacon-v2 @@ -0,0 +1 @@ +Subproject commit 933a12c3413f785fe75eb1fa0a26e1b64e23eae3 diff --git a/repos/beacon2-ri-api b/repos/beacon2-ri-api new file mode 160000 index 0000000..28cfd30 --- /dev/null +++ b/repos/beacon2-ri-api @@ -0,0 +1 @@ +Subproject commit 28cfd303e2db75c1fee76bfbff093ef81a1903ba diff --git a/repos/gdi-userportal-apigateway b/repos/gdi-userportal-apigateway new file mode 160000 index 0000000..6d719b6 --- /dev/null +++ b/repos/gdi-userportal-apigateway @@ -0,0 +1 @@ +Subproject commit 6d719b604206efb733286962e26dc4376be9d6f6 diff --git a/repos/gdi-userportal-ckan-docker b/repos/gdi-userportal-ckan-docker new file mode 160000 index 0000000..2bcbe5b --- /dev/null +++ b/repos/gdi-userportal-ckan-docker @@ -0,0 +1 @@ +Subproject commit 2bcbe5b71bd6ee8993ab8f5301046e78e5b90cc3 diff --git a/repos/gdi-userportal-ckanext-dcat b/repos/gdi-userportal-ckanext-dcat new file mode 160000 index 0000000..a55af9d --- /dev/null +++ b/repos/gdi-userportal-ckanext-dcat @@ -0,0 +1 @@ +Subproject commit a55af9d235ebe108ce6cd7b5b2a16cd12a5a7779 diff --git a/repos/gdi-userportal-ckanext-gdi-userportal b/repos/gdi-userportal-ckanext-gdi-userportal new file mode 160000 index 0000000..c813e29 --- /dev/null +++ b/repos/gdi-userportal-ckanext-gdi-userportal @@ -0,0 +1 @@ +Subproject commit c813e295852882fcfdde5b3a90bb4c4330dc4443 diff --git a/repos/gdi-userportal-ckanext-harvest b/repos/gdi-userportal-ckanext-harvest new file mode 160000 index 0000000..23ac962 --- /dev/null +++ b/repos/gdi-userportal-ckanext-harvest @@ -0,0 +1 @@ +Subproject commit 23ac9622994540bd88e16eb3a83a15b62d719fba diff --git a/repos/gdi-userportal-ckanext-scheming b/repos/gdi-userportal-ckanext-scheming new file mode 160000 index 0000000..18d8c7c --- /dev/null +++ b/repos/gdi-userportal-ckanext-scheming @@ -0,0 +1 @@ +Subproject commit 18d8c7c9a9519676c34c01e34fd56e42926535ed diff --git a/repos/gdi-userportal-docs b/repos/gdi-userportal-docs new file mode 160000 index 0000000..cb5b61b --- /dev/null +++ b/repos/gdi-userportal-docs @@ -0,0 +1 @@ +Subproject commit cb5b61b19ae84cd4abddde2b4566088c7ab2afc2 diff --git a/repos/gdi-userportal-frontend b/repos/gdi-userportal-frontend new file mode 160000 index 0000000..e846dca --- /dev/null +++ b/repos/gdi-userportal-frontend @@ -0,0 +1 @@ +Subproject commit e846dcab92f016acb8466a59649b5ac2b1926593 diff --git a/repos/rems b/repos/rems new file mode 160000 index 0000000..1faf506 --- /dev/null +++ b/repos/rems @@ -0,0 +1 @@ +Subproject commit 1faf506255c58870bcd09bc3a553bcaeecb7344a diff --git a/repos/starter-kit-containerized-computation b/repos/starter-kit-containerized-computation new file mode 160000 index 0000000..ad7748f --- /dev/null +++ b/repos/starter-kit-containerized-computation @@ -0,0 +1 @@ +Subproject commit ad7748f9cb73cfff113b211adb1d72ba6e423c1e diff --git a/repos/starter-kit-htsget b/repos/starter-kit-htsget new file mode 160000 index 0000000..b151e62 --- /dev/null +++ b/repos/starter-kit-htsget @@ -0,0 +1 @@ +Subproject commit b151e62ad146f8165023ad410d1c60b5b7045f9f diff --git a/repos/starter-kit-lsaai b/repos/starter-kit-lsaai new file mode 160000 index 0000000..c12d66e --- /dev/null +++ b/repos/starter-kit-lsaai @@ -0,0 +1 @@ +Subproject commit c12d66e3c570e1a4d9d942ebb5119f7ea216416f diff --git a/repos/starter-kit-lsaai-mock b/repos/starter-kit-lsaai-mock new file mode 160000 index 0000000..3d84eaf --- /dev/null +++ b/repos/starter-kit-lsaai-mock @@ -0,0 +1 @@ +Subproject commit 3d84eaf6e82bc034df3ebe497147e3a963ece617 diff --git a/repos/starter-kit-rems.git b/repos/starter-kit-rems.git new file mode 160000 index 0000000..1faf506 --- /dev/null +++ b/repos/starter-kit-rems.git @@ -0,0 +1 @@ +Subproject commit 1faf506255c58870bcd09bc3a553bcaeecb7344a diff --git a/repos/starter-kit-storage-and-interfaces b/repos/starter-kit-storage-and-interfaces new file mode 160000 index 0000000..86d9712 --- /dev/null +++ b/repos/starter-kit-storage-and-interfaces @@ -0,0 +1 @@ +Subproject commit 86d971294eb371189331c4898befe6dca8604b4b