From 1fd8042df0f611f82712608fe7f9c114603d0842 Mon Sep 17 00:00:00 2001
From: Renovate Bot <renovatebot@lnds.lu>
Date: Mon, 18 Nov 2024 16:04:20 +0000
Subject: [PATCH] chore(deps): update registry.access.redhat.com/ubi9-minimal
 docker tag to v9.5-1731604394

---
 .github/workflows/main.yml |   2 +-
 Dockerfile                 |   2 +-
 _http/beacon.http          | 101 ++++++++++++++++++++++++++++++-------
 3 files changed, 85 insertions(+), 20 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index f37c5c9..71364e2 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -92,7 +92,7 @@ jobs:
           exit-code: "1"
           ignore-unfixed: true
           vuln-type: "os,library"
-          severity: "CRITICAL"
+          severity: "CRITICAL,HIGH"
         env:
           TRIVY_SKIP_DB_UPDATE: true
           TRIVY_SKIP_JAVA_DB_UPDATE: true
diff --git a/Dockerfile b/Dockerfile
index 1eb391f..b717d45 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,7 +1,7 @@
 # SPDX-FileCopyrightText: 2024 PNED G.I.E.
 #
 # SPDX-License-Identifier: Apache-2.0
-FROM registry.access.redhat.com/ubi9-minimal:9.4-1227.1726694542
+FROM registry.access.redhat.com/ubi9-minimal:9.5-1731604394
 WORKDIR /work/
 RUN chown 1001 /work \
     && chmod "g+rwX" /work \
diff --git a/_http/beacon.http b/_http/beacon.http
index 361a5b0..11d6e24 100644
--- a/_http/beacon.http
+++ b/_http/beacon.http
@@ -2,28 +2,93 @@
 #
 # SPDX-License-Identifier: Apache-2.0
 
+
+## Ontology
+POST https://beacon-network-backend-demo.ega-archive.org/beacon-network/v2.0.0/individuals
+Content-Type: application/json
+
+{
+  "meta": {
+    "apiVersion": "2.0"
+  },
+  "query": {
+    "filters": [
+      {
+        "id": "ICD10:J40",
+        "scope": "individual"
+      }
+    ],
+    "requestParameters": [],
+    "includeResultsetResponses": "HIT",
+    "pagination": {
+      "skip": 0,
+      "limit": 1
+    },
+    "testMode": false,
+    "requestedGranularity": "record"
+  }
+}
+
+
+### Alphanumeric
+POST https://beacon-network-backend-demo.ega-archive.org/beacon-network/v2.0.0/individuals
+Content-Type: application/json
+
+{
+    "meta": {
+        "apiVersion": "2.0"
+    },
+    "query": {
+        "filters": [
+            {
+                "id": "PATO:0000011",
+                "operator": ">",
+                "value": "P30Y",
+                "scope": "individual"
+            }
+        ],
+        "requestParameters": [],
+        "includeResultsetResponses": "HIT",
+        "pagination": {
+            "skip": 0,
+            "limit": 1
+        },
+        "testMode": false,
+        "requestedGranularity": "record"
+    }
+}
+
+
+### Variants
 POST https://beacon-network-backend-demo.ega-archive.org/beacon-network/v2.0.0/individuals
 Content-Type: application/json
 
 {
-   "meta":{
-      "apiVersion":"2.0"
-   },
-   "query":{
-      "filters":[
-         {
-            "id":"UBERON:0005352",
-            "scope": "individual"
-         }
-      ],
-      "includeResultsetResponses":"HIT",
-      "pagination":{
-         "skip":0,
-         "limit":0
-      },
-      "testMode":false,
-      "requestedGranularity":"count"
-   }
+  "$schema":"beaconRequestBody.json",
+  "meta": {
+    "apiVersion": "2.0",
+    "requestedSchemas": [
+      {
+        "entityType": "genomicVariation",
+        "schema:": "https://raw.githubusercontent.com/ga4gh-beacon/beacon-v2/main/models/json/beacon-v2-default-model/genomicVariations/defaultSchema.json"
+      }
+    ]
+  },
+  "query": {
+    "requestParameters": {
+      "g_variant": {
+        "referenceName": "NC_000017.11",
+        "start": [7577120],
+        "referenceBases": "G",
+        "alternateBases": "A"
+      }
+    }
+  },
+  "requestedGranularity": "record",
+  "pagination": {
+    "skip": 0,
+    "limit": 10
+  }
 }
 
 ###