Update to work with htsget #33
Workflow file for this run
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| name: Run Demo | |
| on: | |
| pull_request: | |
| jobs: | |
| demo: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Check out code | |
| uses : actions/checkout@v4 | |
| - name: Run compose demo | |
| run: | | |
| cp config/config.yaml.example config/config.yaml | |
| cp config/iss.json.example config/iss.json | |
| cp .env.example .env | |
| docker compose -f docker-compose-demo.yml up -d | |
| until [ "$(docker inspect data_loader --format='{{.State.Status}}')" = "exited" ]; do | |
| echo "waithg for data_loader to finish" | |
| sleep 5 | |
| done | |
| token=$(curl -s -k https://localhost:8080/tokens | jq -r '.[0]') | |
| if [ "$(curl -s -H "Authorization: Bearer $token" http://localhost:8443/metadata/datasets | jq -r '.[]')" != "DATASET0001" ]; then | |
| echo "demo failed" | |
| exit 1 | |
| fi | |
| if [ "$(curl -s -H "Authorization: Bearer $token" http://localhost:8443/metadata/datasets/DATASET0001/files | jq length)" -ne 4 ]; then | |
| echo "demo failed" | |
| exit 1 | |
| fi | |
| echo "demo completed sucessfully" | |
| shell: bash |