diff --git a/ClassifyCNV.py b/ClassifyCNV.py index 44ab3ac..db657bb 100644 --- a/ClassifyCNV.py +++ b/ClassifyCNV.py @@ -540,7 +540,7 @@ def analyze_intragenic_deletions(dosage_sensitive_cnv): # load coordinates of the 3'-most 50 bp for the penultimate exon for each transcript # a gene is not expected to undergo NMD if only the last exon and/or this region are deleted nmd_coords_check = dict() # contains the start and end of the 3' 50bp of second to last exon for each transcript - nmd_path = os.path.join(main_resources_folder, args.GenomeBuild, penultimate_exon_50bp_db) + nmd_path = os.path.join(home_dir, main_resources_folder, args.GenomeBuild, penultimate_exon_50bp_db) nmd_in = open(nmd_path, 'r') for region in nmd_in: parts = region.strip().split() @@ -867,4 +867,3 @@ def rename_directory(): else: print('Results saved to', path_to_results + '/') print('Elapsed time:', '{0:.2f}'.format(t_fact), 'seconds') - \ No newline at end of file