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pick_measure() needs to be more flexible #1

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gadenbuie opened this issue Aug 6, 2018 · 0 comments
Open

pick_measure() needs to be more flexible #1

gadenbuie opened this issue Aug 6, 2018 · 0 comments

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@gadenbuie
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I wrote pick_measure() assuming that columns in the cell segmentation data are named like

Entire Cell Opal 520 Mean

but I think that it's possible for these names to change based on settings in inForm because the phenoptr documentation shows

Entire Cell PDL1 (Opal 520) Mean

as a valid column name.

pick_measure() should be more like a tidyselect helper. I think I can use quotation inside gather_intensity() so that pick_measure() can get access to column names in the csd and from there I can use basic regex to pick the right name.

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