Merge pull request #9 from sanger-bentley-group/fix-db

fixes for db
GlobalPneumoSeq · Feb 29, 2024 · 4028d75 · 4028d75
2 parents 248a0e5 + 93130ed
commit 4028d75
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Showing 6 changed files with 258 additions and 53,863 deletions.
diff --git a/database/meta.tsv b/database/meta.tsv
@@ -8,6 +8,8 @@
 06C	06A	06C	1	ref
 06D	06A	06D	1	ref
 06E	06A	06E	1	ref
+06F	06A	06F	1	ref
+06G	06A	06G	1	ref
 07A	07A	07A	1	ref
 07B	07B	07B	1	ref
 07C	07B	07C	1	ref
@@ -21,11 +23,13 @@
 10B	10A	10B	1	ref
 10C	10C	10C	1	ref
 10F	10C	10F	1	ref
+10X	10X	10X	1	ref
 11A	11A	11A	1	ref
 11B	11A	11B	1	ref
 11C	11A	11C	1	ref
 11D	11A	11D	1	ref
 11F	11A	11F	1	ref
+11E	11A	11E	1	ref
 12A	12A	12A	1	ref
 12B	12A	12B	1	ref
 12F	12A	12F	1	ref
@@ -76,12 +80,14 @@
 34	34	34	1	ref
 35A	35A	35A	1	ref
 35B	35B	35B	1	ref
+35D	35B	35D	1	ref
 35C	35A	35C	1	ref
 35F	35F	35F	1	ref
 36	36	36	1	ref
 37	33A	37	1	ref
 38	25A	38	1	ref
 39	39	39	1	ref
+39X	39X	39X	1	ref
 40	07B	40	1	ref
 41A	41A	41A	1	ref
 41F	41A	41F	1	ref
@@ -96,10 +102,13 @@
 HG264	19B	19B	0	genes	0
 HG264	19B	19C	0	genes	1
 gct	11A	11A	1	pseudo	0
+gct	11A	11E	1	pseudo	0
 gct	11A	11B	1	pseudo	1
 gct	11A	11C	1	pseudo	0
 gct	11A	11D	1	pseudo	0
 gct	11A	11F	1	pseudo	1
+wcjE	11A	11E	1	pseudo	1
+wcjE	11A	11A	1	pseudo	0
 glf	15A	15A	0	genes	0
 glf	15A	15B	0	genes	0
 glf	15A	15C	0	genes	0
@@ -153,6 +162,8 @@ wciI-1	12A	46	0	allele
 wciI-2	12A	12F	0	allele
 wciN-1	06A	06A	0	allele
 wciN-1	06A	06B	0	allele
+wciN-1	06A	06G	0	allele
+wciN-1	06A	06F	0	allele
 wciN-1	33B	33B	0	allele
 wciN-2	06A	06C	0	allele
 wciN-2	06A	06D	0	allele
@@ -209,6 +220,8 @@ wciX	18A	18F	0	genes	1
 wciX	18A	18F	1	pseudo	0
 wciZ	15A	15B	1	pseudo	0
 wciZ	15A	15C	1	pseudo	1
+wciG	35B	35B	1	pseudo	0
+wciG	35B	35D	1	pseudo	1
 wcjA_09L	09A	09L	0	snps	414	CAT
 wcjA_09L	09A	09L	0	snps	429	GGT
 wcjA_09L	09A	09L	0	snps	528	GAT
@@ -230,6 +243,7 @@ wcjD	09A	09V	0	genes	1
 wcjE	09A	09A	1	pseudo	1
 wcjE	09A	09V	1	pseudo	0
 wcjE	11A	11A	0	genes	1
+wcjE	11A	11E	0	genes	1
 wcjE	11A	11B	0	genes	0
 wcjE	11A	11C	0	genes	0
 wcjE	11A	11D	0	genes	1
@@ -251,6 +265,7 @@ wcrK	35A	35A	1	pseudo	1
 wcrK	35A	35C	1	pseudo	0
 wcrK	35A	42	1	pseudo	0
 wcrL_11A	11A	11A	0	snps	334	AAT
+wcrL_11A	11A	11E	0	snps	334	AAT
 wcrL_11D	11A	11D	0	snps	334	AGT
 wcrL_11F	11A	11F	0	snps	334	GCT
 wcrX	41A	41A	1	pseudo	1
@@ -260,6 +275,7 @@ wcwA	22A	22F	0	genes	0
 wcwC	22A	22A	0	genes	1
 wcwC	22A	22F	0	genes	0
 wcwC_11A	11A	11A	0	genes	1
+wcwC_11A	11A	11E	0	genes	1
 wcwC_11A	11A	11B	0	genes	0
 wcwC_11A	11A	11C	0	genes	0
 wcwC_11A	11A	11D	0	genes	1
@@ -294,6 +310,7 @@ wcwK_40	07B	40	0	snps	928	AGT
 wcwK_40	07B	40	0	snps	937	GAA
 wcwK_40	07B	40	0	snps	946	GAT
 wcwR	11A	11A	0	genes	0
+wcwR	11A	11E	0	genes	0
 wcwR	11A	11B	0	genes	1
 wcwR	11A	11C	0	genes	1
 wcwR	11A	11D	0	genes	0
@@ -418,3 +435,5 @@ wzy_12B	12A	12B	0	snps	251	ACT
 wzy_12F	12A	12F	0	snps	251	ACT
 wzy_44	12A	44	0	snps	251	ACT
 wzy_46	12A	46	0	snps	251	ACT
+alternative_aliB_NT	alternative_aliB_NT	alternative_aliB_NT	1	ref
+Swiss_NT	Swiss_NT	Swiss_NT	1	ref